View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_26 (Length: 292)
Name: NF18950_low_26
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 140 - 285
Target Start/End: Original strand, 3300803 - 3300947
Alignment:
| Q |
140 |
tacatgacaatgcacacaaaataatatcctgccaaaggttcaaaatgatttatgacaataatagataattagtaaatggaaaataattttataaagtttg |
239 |
Q |
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| T |
3300803 |
tacatgacaatgcacacaaa-taatatcctgccaaaggttcaaaatgatttatgacaataatagataattagtaaatggaaaataatttcataaagtttg |
3300901 |
T |
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| Q |
240 |
acctacttacagaaataattgaatcaaaattggtccccctatgcta |
285 |
Q |
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| T |
3300902 |
acctacttacagaaataattgaatcaaaattggtccccctttgcta |
3300947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 3300594 - 3300737
Alignment:
| Q |
1 |
accgtatcaaacttattttttatggtggtcgaatctagtaatgctctattttgttttttgtattttgcaacatcactccaatgatcaattgcttatgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3300594 |
accgtatcaaacttattttttatggtggtccaatctagtaatgctctattttgttttttgtattttgcaacatcactccaatgattaattgcttatgcaa |
3300693 |
T |
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| Q |
101 |
taacagtgcagatgattca-gaatccaagtgaataataaataca |
143 |
Q |
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| T |
3300694 |
taacagtgcagatgattcatgaatccaagtgaataataaataca |
3300737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 41388413 - 41388373
Alignment:
| Q |
146 |
acaatgcacacaaaataatatcctgccaaaggttcaaaatg |
186 |
Q |
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| T |
41388413 |
acaatgcacacaaaaagatatcttgccaaaggttcaaaatg |
41388373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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