View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_27 (Length: 289)
Name: NF18950_low_27
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 28980446 - 28980714
Alignment:
| Q |
17 |
aagaacgtatatacaatgacatcaatgacaattttacaatgatccaatataagattttcattgtttgaagttataatgtcaaacttttatcatcgagttg |
116 |
Q |
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| T |
28980446 |
aagaacgtatatacgatgacatcaacgacaattttacaatgatccaatataagattttcattgtttgaagttataatgtcaaacttttatcatcgagttg |
28980545 |
T |
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| Q |
117 |
tcagttttgagaaagaaatatataattaggcaattagttttttggattgtcaaggaagattcacgcgtgtttcttcaaacttaatcaagattatgagttc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28980546 |
tcagttttgagaaagaaatatataattaggcaattagttttttagattgtcaaggaagattcacgcgtgtttcttcaaacttaatcaagattctgagttc |
28980645 |
T |
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| Q |
217 |
gaatacagtcttgaatatgtatgcagtagcgttaaaactcttaaagaaaatttgtcattcatttcagtc |
285 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||| |||| |
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| T |
28980646 |
gaatacagtcttggatatgtatgcagtagcgttaaaactcttaaggaaagtttgtcactcatttgagtc |
28980714 |
T |
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