View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_28 (Length: 273)
Name: NF18950_low_28
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 11542166 - 11542404
Alignment:
| Q |
16 |
aaaatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542166 |
aaaatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatc |
11542265 |
T |
|
| Q |
116 |
tcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542266 |
tcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattct |
11542365 |
T |
|
| Q |
216 |
aagcgtagtcctcggcggagtactgatgagaccataagc |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
11542366 |
aagcgtagtcctcggcggagtactgatgagaccataagc |
11542404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 34614711 - 34614949
Alignment:
| Q |
16 |
aaaatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34614711 |
aaaatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatc |
34614810 |
T |
|
| Q |
116 |
tcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34614811 |
tcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattct |
34614910 |
T |
|
| Q |
216 |
aagcgtagtcctcggcggagtactgatgagaccataagc |
254 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| |
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| T |
34614911 |
aagagtagtcctcggcggagtactgatgagaccataagc |
34614949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 34757289 - 34757495
Alignment:
| Q |
48 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34757289 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
34757388 |
T |
|
| Q |
148 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagac |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34757389 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagagtagtcctcggcggagtactgatgagac |
34757488 |
T |
|
| Q |
248 |
cataagc |
254 |
Q |
| |
|
||||||| |
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|
| T |
34757489 |
cataagc |
34757495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 88 - 255
Target Start/End: Original strand, 34742222 - 34742389
Alignment:
| Q |
88 |
cattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctc |
187 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||||||||||| |
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| T |
34742222 |
cattttccatctttgaaatgatgaaatctcttgttgtccctcacaatgagtttcattcccacaatcttagacatgaatttgatagcattgtgacagtctc |
34742321 |
T |
|
| Q |
188 |
cacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagaccataagct |
255 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
34742322 |
cacatatacgtagattcttgataattctaagcatagtccttggcggagtactgatgagaccataagct |
34742389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 34757254 - 34757287
Alignment:
| Q |
23 |
aatctagcaatatatcatcagagtatctacattt |
56 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
34757254 |
aatctagcaatatatcatcagagtatctacattt |
34757287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 33778995 - 33779178
Alignment:
| Q |
68 |
accaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgatttt |
167 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||||| || || ||||| || || ||||| || ||||| || |||||| | |||||||| || |
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| T |
33778995 |
accagtaatccccacaagagcattttccatccttgaaatgatgaaaccttttgttatctctaacaatcagttccctccctacaatcctagacatgatctt |
33779094 |
T |
|
| Q |
168 |
gatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagaccata |
251 |
Q |
| |
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||| |||||||||||||| ||||| | ||| || ||||||||||| ||||| | || || || |||||||| || |||||||| |
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| T |
33779095 |
gatggcattgtgacagtcaccacagacacgaaggttcttgataatcctaagaggtgttctaggaggagtactaataagaccata |
33779178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 17993032 - 17992990
Alignment:
| Q |
65 |
actaccaataatctccacaagagcattttccatctttgaaatg |
107 |
Q |
| |
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||||||| ||||| |||||||||||||| |||||||||||||| |
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| T |
17993032 |
actaccagtaatcaccacaagagcatttcccatctttgaaatg |
17992990 |
T |
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