View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_36 (Length: 249)
Name: NF18950_low_36
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 36322706 - 36322947
Alignment:
| Q |
1 |
ccaccaacttgttccccaacctggccccttcttccatgtattgtcgacatacccttttccacaatgaccctctattccatcaacaaacccatcaatgttt |
100 |
Q |
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| T |
36322706 |
ccaccaacttgttccccaacctggccccttcttccatgtattgtcgacatacccttttccacaatgaccctctattccatcaacaaacccatcaatgttt |
36322805 |
T |
|
| Q |
101 |
tccccttttttgccattccagattgcacctaagcccgaccagtatgcacaacaatcaactccaatgttagtatttgatttttctacctcccaatttgaaa |
200 |
Q |
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| T |
36322806 |
ttcccttttttgccattccagattgcacctaagcccgaccagtatgcacaacaatcaactccaatgttagtatttgatttttctacttcccaatttgaaa |
36322905 |
T |
|
| Q |
201 |
ataaatattttttaggcgtaaatatgtcattgatctctgctc |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36322906 |
ataaatattttttaggcgtaaatatgtcattgatccctgctc |
36322947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 36305420 - 36305630
Alignment:
| Q |
30 |
tcttccatgtattgtcgacatacccttttccacaatgaccctctattccatcaacaaacccatcaatgttttccccttttttgccattccagattgcacc |
129 |
Q |
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| T |
36305420 |
tcttccatgaattgtcgacatacccttttccacaatgaccctctattccatcaccacacccgtcattgtttttccctttgttgccattcctgattgcacc |
36305519 |
T |
|
| Q |
130 |
taagcccgaccagtatgcacaacaatcaactccaatgttagtatttgatttttctacctcccaatttgaaaataaatattttttaggcgtaaatatgtca |
229 |
Q |
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| T |
36305520 |
taagcccaaccagtatgaacaacaatcaactccaatgttagtatttgatttttctatttcccaagctaaaaataaatattttttatgtgtaaatatctca |
36305619 |
T |
|
| Q |
230 |
ttgatctctgc |
240 |
Q |
| |
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|||||| |||| |
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| T |
36305620 |
ttgatccctgc |
36305630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 36308752 - 36308973
Alignment:
| Q |
14 |
ccccaacctggccccttcttccatgtattgtcgacatacccttttccacaatgaccctctattccatcaacaaacccatcaatgttttccccttttttgc |
113 |
Q |
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||||||| | || |||||||||| | |||||| |||||| | ||||||| ||||||||||||||||||| || |||| ||| |||||| |||||| |||| |
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| T |
36308752 |
ccccaacttcgctccttcttccaggcattgtcaacatactcctttccactatgaccctctattccatcaccatacccgtcattgtttttccctttgttgc |
36308851 |
T |
|
| Q |
114 |
cattccagattgcacctaagcccgaccagtatgcacaacaatcaactccaatgttagtatttgatttttctacctcccaatttgaaaataaatatttttt |
213 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||| |
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| T |
36308852 |
cattccagattgcacctaagcccgaccaatatgcacaacaatcaactcaaatgttagtttttgatttttctatttcccaagctgaaaataaatatttttt |
36308951 |
T |
|
| Q |
214 |
aggcgtaaatatgtcattgatc |
235 |
Q |
| |
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| | ||||||||| |||||||| |
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| T |
36308952 |
atgtgtaaatatgccattgatc |
36308973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 36345522 - 36345629
Alignment:
| Q |
44 |
tcgacatacccttttccacaatgaccctctattccatcaacaaacccatcaatgttttccccttttttgccattccagattgcacctaagcccgaccagt |
143 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| || | || ||| ||||||| ||||| |||||||||||||||||||||||| | ||||| | |
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| T |
36345522 |
tcgatatacccttttccacaatgaccctctattccatcaccacatccgtcattgttttctcctttgttgccattccagattgcacctaagtctgaccaat |
36345621 |
T |
|
| Q |
144 |
atgcacaa |
151 |
Q |
| |
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|||||||| |
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| T |
36345622 |
atgcacaa |
36345629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 208
Target Start/End: Original strand, 36336948 - 36337103
Alignment:
| Q |
44 |
tcgacatacccttttccacaatgaccctctattccatcaacaaacccatcaatgttttccccttttttgccattccagattgcacctaagcccgaccagt |
143 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||| || | || ||| || ||| ||||| ||||| ||| | ||||||||||||| ||||||| |
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| T |
36336948 |
tcgacatacccttttctacaatgaatctctattccatcaccacaaccgtcattgcttttcccttcgttgcccttcaaaattgcacctaagcaagaccagt |
36337047 |
T |
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| Q |
144 |
atgcacaacaatcaactccaatgttagtatttgatttttctacctcccaatttgaaaataaatat |
208 |
Q |
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|||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |
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| T |
36337048 |
atgcacaacaat---------agttagtatttgatttttctatttcccaaactgaaaataaatat |
36337103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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