View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_40 (Length: 238)
Name: NF18950_low_40
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_40 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 37498959 - 37498738
Alignment:
| Q |
17 |
acctttgtcacgacagatgctgtaatctgtaactaccattgaaacaaaataaggacaaggagttgtgttactcaccataaagcaaatgttctttaaatct |
116 |
Q |
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| T |
37498959 |
acctttgtcacgacagatgctgtaatctgtaactaccattgaaacaaaatagggacaaggagttgtgttactcaccataaagcaaatgttctttaaatct |
37498860 |
T |
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| Q |
117 |
agtaaaggagtgctgtgatcttctctaacatcgccagctttgtcggttgtccaagattccccagttagtgaggcctggctgttaagaagttaatgaaatc |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37498859 |
agtaaaggagtgttgtgatcttctctaacatcgccagctttgtcggttgtccaagattccccagttagtgaggcctggctgttaagaagttaatgaaatc |
37498760 |
T |
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| Q |
217 |
acaaaatgacatttagttagct |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
37498759 |
acaaaatgacatttagttagct |
37498738 |
T |
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