View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_41 (Length: 237)
Name: NF18950_low_41
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 45503621 - 45503764
Alignment:
| Q |
7 |
ttatatacctagtttgatctaatccaatccatattatcccacacataagaaatcaatgtcacttttgcatataaaaatattaactaaagtcaatccatca |
106 |
Q |
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| T |
45503621 |
ttatatacctagtttgatctaatccaatccatattatcccacacataagaaatcaatgtcacttttgcatataaaaatattaactaaagtcaatccatca |
45503720 |
T |
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| Q |
107 |
catt-aaaaagagaattatgtaattttatgtagtatggtgcgtt |
149 |
Q |
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| T |
45503721 |
cattaaaaaagagaattatgtaattttatgtagtatggtgcgtt |
45503764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 45503783 - 45503869
Alignment:
| Q |
134 |
tgtagtatggtgcgtttataattataaatgtatagtatgtactagttcacacaaaggccattggctatgtgtggatatagcagaaac |
220 |
Q |
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| T |
45503783 |
tgtagtatggtgcgtttataattataaatgtatagtatgtactagttcacacaaaggccattggctatgtgtggatatagcagaaac |
45503869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 19851475 - 19851329
Alignment:
| Q |
7 |
ttatatacctagtttgatctaatccaatccatattatcccacacataagaaatcaatgtcacttttgcatataaaaatattaactaaagtcaatccatca |
106 |
Q |
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| T |
19851475 |
ttatatacctagtttgatctaatccaatccatattatcccacacataagaaatcaatgtcacttttgcatataaaaatattaactaaagtcaatccatca |
19851376 |
T |
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| Q |
107 |
catta-aaaagagaattatgtaattttatgtagtatggtgcgtttat |
152 |
Q |
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| T |
19851375 |
cattaaaaaagagaattatctaattttatgtagtatggtgcgtttat |
19851329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 19851311 - 19851224
Alignment:
| Q |
134 |
tgtagtatggtgcgtttataattataaatgtatagtatgtactagttcacacaaaggccattggctatgtgtggatatagcagaaacc |
221 |
Q |
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| T |
19851311 |
tgtagtatggtgcgtttataattataaatgtatagtatgtactagttcacacaaaggccgttggctatgtgtggatatagcagaaacc |
19851224 |
T |
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