View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_43 (Length: 216)
Name: NF18950_low_43
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 4114018 - 4113962
Alignment:
| Q |
58 |
aaatcaacaacatgaagcatgaaactgaacaatcagattctacattagaaattacag |
114 |
Q |
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| T |
4114018 |
aaatcaacaacatgaagcatgaaactgaaaaatcagattctacattagaaattacag |
4113962 |
T |
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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 4114084 - 4114035
Alignment:
| Q |
17 |
cacagactaaagtactcaaacaacattgtaacattacaatcaaatcaaca |
66 |
Q |
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| T |
4114084 |
cacaaactaaagtactcaaacaacattgtaacatcacaatcaaatcaaca |
4114035 |
T |
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