View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_5 (Length: 547)
Name: NF18950_low_5
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 328
Target Start/End: Original strand, 36322197 - 36322507
Alignment:
| Q |
17 |
aaataaaatggtattagactttctattggacgattttgaaccataatatggctaatgtggcgctccacctgtcgtgtggttaaaataaaccaaaaggtca |
116 |
Q |
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| T |
36322197 |
aaataaaatggtattagactttctattggacaattttgaaccataatattgctaatgtggcgctccacctgtcgtgtggttaaaataaaccaaaaggtca |
36322296 |
T |
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| Q |
117 |
tttaagactttcaatgcaaaagttattactttcgtttacttaaacaatacctcaatcatacttgttaacatttcttttcnnnnnnnatacaaatattctc |
216 |
Q |
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| T |
36322297 |
tttaagactttcaatgcaaaagtta-tactttcgtttacttaaacaatacctcaatcacacttgttaacatttcttttctttttttatacaaatatcctc |
36322395 |
T |
|
| Q |
217 |
tccatagataataccttacttttttgaataggtcaggaggtagaacagagacaattttgaaattccaaataggttgacaccctaaaagacccttatccta |
316 |
Q |
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| T |
36322396 |
tccatacataataccttacttttttgaataggtcaggaggtagaacagagacaattttgaaattccaaataggttgacaccctaaaagacccttatccta |
36322495 |
T |
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| Q |
317 |
tacggcctatct |
328 |
Q |
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| T |
36322496 |
tacggcctatct |
36322507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 36322566 - 36322654
Alignment:
| Q |
387 |
caattcaccattgaaaagttctataactttccatcacctcctcctttttcaccacctccttttccttcaacaggaaggggtattttgta |
475 |
Q |
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| T |
36322566 |
caattcaccattgaaaagttctataactttccatcacctcctcctttttcaccacctccttttccttcaacgggaaggggtattttgta |
36322654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 385 - 452
Target Start/End: Original strand, 36308582 - 36308649
Alignment:
| Q |
385 |
tacaattcaccattgaaaagttctataactttccatcacctcctcctttttcaccacctccttttcct |
452 |
Q |
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| T |
36308582 |
tacaatccaccatcgaaaagttctataactttccatcacgtcctccttttccaccgcctccttttcct |
36308649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 442
Target Start/End: Original strand, 36305249 - 36305306
Alignment:
| Q |
385 |
tacaattcaccattgaaaagttctataactttccatcacctcctcctttttcaccacc |
442 |
Q |
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| T |
36305249 |
tacaattcatcatcgaaaagttctataactttccattacgtcctccttttccaccacc |
36305306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 452
Target Start/End: Original strand, 36336757 - 36336815
Alignment:
| Q |
394 |
ccattgaaaagttctataactttccatcacctcctcctttttcaccacctccttttcct |
452 |
Q |
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|||| |||||||||||||||||| |||| || |||| |||| ||||||||||||||||| |
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| T |
36336757 |
ccatcgaaaagttctataacttttcatctccgcctcattttccaccacctccttttcct |
36336815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 251
Target Start/End: Original strand, 36308286 - 36308408
Alignment:
| Q |
129 |
aatgcaaaagttattactttcgtttacttaaacaatacctcaatcatacttgttaacatttcttttcnnnnnnnatacaaatattctctccatagataat |
228 |
Q |
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| T |
36308286 |
aatgcaaaagttacaactttcgattacttaaacaatgcctcaatgacacttgatatcattttatttttctttaattaaaaaaatcctctccacacataat |
36308385 |
T |
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| Q |
229 |
accttacttttttgaataggtca |
251 |
Q |
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| T |
36308386 |
accttacttttttgaataggtca |
36308408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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