View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_6 (Length: 536)
Name: NF18950_low_6
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 24 - 527
Target Start/End: Original strand, 33824181 - 33824684
Alignment:
| Q |
24 |
atggctaatagatattaacatatagtgtcacaacttatgaacctattaatcatcaagtgatcttaagggaaaatgtgaaaacccatattccaagcataag |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33824181 |
atggctaatagatattaacatatagtgtcacaacttatgaacctattaatcatcaagcgatcttaagggaaaatgtgaaaacccacattccaagcataag |
33824280 |
T |
|
| Q |
124 |
aagacaaatctaagtaacatgttatggccactaattaaataagcacatataatacattatcaccaattcaccatcattatataaaggtaaacatctgcat |
223 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824281 |
aagacaaatctaagtaacatgttatgcccactaattaaataagcacacataatacattatcaccaattcaccatcattatataaaggtaaacatctgcat |
33824380 |
T |
|
| Q |
224 |
gtggaaactaacccttcaaagcgaacaatattcaacaataagcatcaaaacctgtgtagcgcatgagctaatttaaccatggatccaagaatttccttct |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824381 |
gtggaaactaacccttcaaagcgaacaatattcaacaataagcatcaaaatctgtgtagcgcatgagctaatttaaccatggatccaagaatttccttct |
33824480 |
T |
|
| Q |
324 |
ccaatgattttgttgttagccaacaagcaatcaaacatgaaaacatatacagagaagctcctgtctcttcggatttcgaattctctgtcaaaaactattc |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824481 |
ccaatgattttgttgttagccaacaagcaatcaaacatgaaaacatatacagagaagctcctgtctcttcggatttcgaattctctgtcaaaaactattc |
33824580 |
T |
|
| Q |
424 |
tatgatatcagcagatcaagccttttttaagggcatgttgttacctctcagtagtgaaggttccaagaaggtgactataagagatgaactacttaatgat |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824581 |
tatgatatcagcagatcaagccttttttaagggcatgttgttacctctcagtagtgaaggttccaagaaggtgactataagagatgaactacttaatgat |
33824680 |
T |
|
| Q |
524 |
gatg |
527 |
Q |
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|||| |
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| T |
33824681 |
gatg |
33824684 |
T |
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