View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18950_low_9 (Length: 482)
Name: NF18950_low_9
Description: NF18950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18950_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 149 - 444
Target Start/End: Complemental strand, 40508533 - 40508240
Alignment:
| Q |
149 |
taaattttcttttataggaacataaatttatcttatatacaattaaattaactctattatctttacattttgatttgcaggattttgagaatgaagaatt |
248 |
Q |
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| T |
40508533 |
taaattttcttttataggaacataaatttatcttata--caattaaattaactctattatctttacattataatttgcaggattttgagaatgaagaatt |
40508436 |
T |
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| Q |
249 |
ggtcagaatacttccaaaatgtagccatatttttcatttagaatgcattgacaagtggctaatccaacaagaatcatgtcctatttgtagaacttatgtt |
348 |
Q |
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| T |
40508435 |
ggtcagaatacttccaaaatgtagccatatttttcatttagaatgcattgacaagtggctaatccaacaaggatcatgtcccatttgtagaacttatgtt |
40508336 |
T |
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| Q |
349 |
gttgatcacattaattcgtgatagtttggnnnnnnngttgatgtataatagttttgttttgagcttcgtccctctttgtaaaaaaaagtagtttcg |
444 |
Q |
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| T |
40508335 |
gttgatcacattaattcgtgatagtttggtttttttgttgatgtataatagttttgttttgagcttcgtccctctttgtaaaaaaaagtagtttcg |
40508240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 40510679 - 40510529
Alignment:
| Q |
1 |
taatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgttgatgtgaccatcg |
100 |
Q |
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| T |
40510679 |
taatgtgttaaattacataaaagtgtgaatgtgacgtaccaaaattgtcgatgagaccatgggaaataattgtcacattaaattgttgatgtgaccatcg |
40510580 |
T |
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| Q |
101 |
ggtagataagtgtattggatattggatgtcatgtcaaataggcaaaactaa |
151 |
Q |
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| T |
40510579 |
ggtagataagtgtattggatattggatgtcatgtcaaataggcaaaactaa |
40510529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 214 - 369
Target Start/End: Complemental strand, 40519526 - 40519371
Alignment:
| Q |
214 |
cattttgatttgcaggattttgagaatgaagaattggtcagaatacttccaaaatgtagccatatttttcatttagaatgcattgacaagtggctaatcc |
313 |
Q |
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| T |
40519526 |
cattttgatttgcaggattttgagaatgaagaattggtgagattacttccaaaatgtagccacatttttcatttagagtgcattgacaagtggctagtac |
40519427 |
T |
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| Q |
314 |
aacaagaatcatgtcctatttgtagaacttatgttgttgatcacattaattcgtga |
369 |
Q |
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| T |
40519426 |
aacaaggatcatgtcctatttgtagaacttacgttcctgaccatattaattcgtga |
40519371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 40519649 - 40519536
Alignment:
| Q |
1 |
taatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgttgatgtgaccatcg |
100 |
Q |
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| T |
40519649 |
taatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtgaccatct |
40519550 |
T |
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| Q |
101 |
ggtagataagtgta |
114 |
Q |
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|||| |||| |||| |
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| T |
40519549 |
ggtatataaatgta |
40519536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 41781995 - 41782110
Alignment:
| Q |
1 |
taatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgttgatgtgaccatcg |
100 |
Q |
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|||| |||||| ||||||||||||||||||||||||| || || | ||||||||||||| |||||||||||||||||| ||||||| || |||| |
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| T |
41781995 |
taatatgttaatttacataaaagtgtgaatgtgacatgttgaagttcttcatgagaccatgggaaataattgtcacattaaactgttgatatggccattt |
41782094 |
T |
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| Q |
101 |
ggtagataagtgtatt |
116 |
Q |
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|||| |||| |||||| |
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| T |
41782095 |
ggtatataaatgtatt |
41782110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 18163685 - 18163577
Alignment:
| Q |
1 |
taatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgttgatgtgaccatcg |
100 |
Q |
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|||| |||||| ||||||||||||||||||||||||| || |||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||| |
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| T |
18163685 |
taatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatgaggaatcattgtcacattaaattgttgatgtggccatct |
18163586 |
T |
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| Q |
101 |
ggtagataa |
109 |
Q |
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| T |
18163585 |
ggtatataa |
18163577 |
T |
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