View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18951_high_12 (Length: 269)
Name: NF18951_high_12
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18951_high_12 |
 | |
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| [»] scaffold0036 (1 HSPs) |
| | |
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| [»] scaffold0891 (1 HSPs) |
| | |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 26901345 - 26901596
Alignment:
| Q |
1 |
atcttcaatctccaaaccaatgccccattcattacaacaaaatctacaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccacca |
100 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26901345 |
atcttcaatttccaaaccaatcccccattcattacaacaaaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccacca |
26901444 |
T |
|
| Q |
101 |
caaacactttctaacgttgaattccaaccactatgtgtcaaaaaccctccaattgatgaatgacctaaaacttcctcttgtggacaccaacttgataata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26901445 |
caaacactttctaacgttgaattccaaccactatgtgtcaaaaaccctccaattgatgaatgacctaaaacttcctcttgtggacaccaacttgataata |
26901544 |
T |
|
| Q |
201 |
aacctctatttttggtctcttccaaaaactcttgaggtaaaacagcattttt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26901545 |
aacctctatttttggtctcttccaaaaactcttgaggtaaaacagcattttt |
26901596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 26672059 - 26672309
Alignment:
| Q |
1 |
atcttcaatctccaaaccaatgccccattcattacaacaaaatctacaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccacca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26672059 |
atcttcaatctccaaaccaatcccccattcattacaacaaaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccacca |
26672158 |
T |
|
| Q |
101 |
caaacactttctaacgttgaattccaaccactatgtgtcaaaaaccctccaattgatgaatgacctaaaacttcctcttgtggacaccaacttgataata |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
26672159 |
caaacactttccaacgttgaattccaaccattatgtgtcaaaaaccctccaattgatgaatgtcccaaaacttcctcttgtggacaccaacttgataata |
26672258 |
T |
|
| Q |
201 |
aacctctatttttggtctcttccaaaaactcttgaggtaaaacagcatttt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
26672259 |
aacctctatttttggtctcttccaaaaactctagaggcaaaacagcatttt |
26672309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 26943657 - 26943907
Alignment:
| Q |
1 |
atcttcaatctccaaaccaatgccccattcattacaacaaaatctacaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccacca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
26943657 |
atcttcaatctccaaaccaatcccccattcattacaacaaaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccacca |
26943756 |
T |
|
| Q |
101 |
caaacactttctaacgttgaattccaaccactatgtgtcaaaaaccctccaattgatgaatgacctaaaacttcctcttgtggacaccaacttgataata |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
26943757 |
caaacactttccaacgttgaattccaaccattatgtgtcaaaaaccctccaattgatgaatgtcccaaaacttcctcttgtggacaccaacttgataata |
26943856 |
T |
|
| Q |
201 |
aacctctatttttggtctcttccaaaaactcttgaggtaaaacagcatttt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
26943857 |
aacctctatttttggtctcttccaaaaactctagaggcaaaacagcatttt |
26943907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 13648286 - 13648186
Alignment:
| Q |
44 |
ctacaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccaccacaaacactttctaacgttgaattccaaccactatgtgtcaaaa |
143 |
Q |
| |
|
|||| |||| ||||||| |||||||| |||||||||||||||| || ||||||| | |||||||| || ||||||||||| ||| |||||||||||| |
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|
| T |
13648286 |
ctactattaatttgttgatcagcaaaataaggccaacatatcataggcacaccacaaaccacactttccaaagttgaattccacccattatgtgtcaaaa |
13648187 |
T |
|
| Q |
144 |
a |
144 |
Q |
| |
|
| |
|
|
| T |
13648186 |
a |
13648186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 13658814 - 13658714
Alignment:
| Q |
44 |
ctacaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccaccacaaacactttctaacgttgaattccaaccactatgtgtcaaaa |
143 |
Q |
| |
|
|||| |||| ||||||| |||||||| |||||||||||||||| || ||||||| | ||||| || || || |||||||| |||||||||||||||| |
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|
| T |
13658814 |
ctactattaatttgttgatcagcaaaataaggccaacatatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaa |
13658715 |
T |
|
| Q |
144 |
a |
144 |
Q |
| |
|
| |
|
|
| T |
13658714 |
a |
13658714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 91583 - 91333
Alignment:
| Q |
1 |
atcttcaatctccaaaccaatgccccattcattacaacaaaatctacaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccacca |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||| || |
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|
| T |
91583 |
atcttcaatctccaaaccaatctcccactcattacaacaaaacctacaattagtttgttgctccgcaaagaacggccaacatatcattggaacaccggca |
91484 |
T |
|
| Q |
101 |
caaacactttctaacgttgaattccaaccactatgtgtcaaaaaccctccaattgatgaatgacctaaaacttcctcttgtggacaccaacttgataata |
200 |
Q |
| |
|
|| ||||| || ||||| ||||||||||||||||||||||| || ||||| || | |||||| | || |||||| ||||| ||||||||||||| || | |
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|
| T |
91483 |
cacacactctccaacgtcgaattccaaccactatgtgtcaagaatcctcctatagcggaatgagccaacacttccccttgtagacaccaacttgacaaca |
91384 |
T |
|
| Q |
201 |
aacctctatttttggtctcttccaaaaactcttgaggtaaaacagcatttt |
251 |
Q |
| |
|
| ||||||| ||| |||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
91383 |
atcctctatctttcgtctcttccaaaaactctagaggtagaacagcatttt |
91333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 37399191 - 37399328
Alignment:
| Q |
46 |
acaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccaccacaaacactttctaacgttgaattccaaccactatgtgtcaaaaac |
145 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||| ||||| |||||| ||||| || ||||| ||||| |||| ||| || ||||| |
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|
| T |
37399191 |
acaattagtttgttgttcagcaaaaaaaggccaacaagccaatggcacaccctcacaaatgctttccaatgttgagttccatccacaatgagttaaaaag |
37399290 |
T |
|
| Q |
146 |
cctccaattgatgaatgacctaaaacttcctcttgtgg |
183 |
Q |
| |
|
|||||||| ||||||||| || ||||| ||||||||| |
|
|
| T |
37399291 |
cctccaatacatgaatgacttagaactttctcttgtgg |
37399328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 3542 - 3505
Alignment:
| Q |
44 |
ctacaattagtttgttgttcagcaaagaaaggccaaca |
81 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3542 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
3505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 405 - 368
Alignment:
| Q |
44 |
ctacaattagtttgttgttcagcaaagaaaggccaaca |
81 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
405 |
ctacaatttgtttgttgctcagcaaagaaaggccaaca |
368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 405 - 368
Alignment:
| Q |
44 |
ctacaattagtttgttgttcagcaaagaaaggccaaca |
81 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
405 |
ctacaatttgtttgttgctcagcaaagaaaggccaaca |
368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 35866001 - 35866038
Alignment:
| Q |
44 |
ctacaattagtttgttgttcagcaaagaaaggccaaca |
81 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
35866001 |
ctacaatttgtttgttgctcagcaaagaaaggccaaca |
35866038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 35735587 - 35735623
Alignment:
| Q |
44 |
ctacaattagtttgttgttcagcaaagaaaggccaac |
80 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
35735587 |
ctacaatttgtttgttgctcagcaaagaaaggccaac |
35735623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 27224154 - 27224203
Alignment:
| Q |
95 |
ccaccacaaacactttctaacgttgaattccaaccactatgtgtcaaaaa |
144 |
Q |
| |
|
|||||||||| || ||| || |||||||||||||||| |||||||||||| |
|
|
| T |
27224154 |
ccaccacaaataccttccaatgttgaattccaaccacaatgtgtcaaaaa |
27224203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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