View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18951_high_3 (Length: 498)
Name: NF18951_high_3
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18951_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 34146138 - 34146634
Alignment:
| Q |
1 |
tagttttgtcaaaaagcttcacagcttcgtcaagttcaccgttcttggaatacacagtaatcatagtatttaaggaggttaaatgtttgagcctcatttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34146138 |
tagttttgtcaaaaagcttcacagcttcgtcaagttcaccgttcttggaatacacagtaatcatagtatttaaggaggttaaatgtttgagactcatttt |
34146237 |
T |
|
| Q |
101 |
ctcaaacaannnnnnnnnnnnnnnaaactgaccactcatcgcataacctttaatcatcaaattattagagatgagagttttatcccccaatccataaaag |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
34146238 |
ctcaaacaattttttcgattttttaaactgaccactcatcgcataacctttaatcatcaaattattagagatgagagttttatctctcaatccataaaag |
34146337 |
T |
|
| Q |
201 |
atcatccccgcttctttgaccctccccattgaaacaaggccaccaatcagcgagtcagcaacgttcgaacaagcttcccctgccatgctttcataaactc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34146338 |
atcatccccgcttctttgaccctccccattgaaacaaggccaccaatcagcgagtcagcaacgttcgaacaagcttcccctaccatgctttcataaactc |
34146437 |
T |
|
| Q |
301 |
tctttgcgtcgtctacagcatcagaaacacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgcaaagtccatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34146438 |
tctttgcgtcgtctacagcatcagaaacacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgcaaagtccatg |
34146537 |
T |
|
| Q |
401 |
aacaaccttcccaacatacagaatcctaagtctagcacaaaccctcaaaacacaatccaaagtgaactcattaggcaacacctctgtgctcctcctc |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34146538 |
aacaaccttcccaacatacagaatcctaagtctagcacaaaccctcaaaacacaatccaaagtgaactcattaggcaacacctctgaactcctcctc |
34146634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 29009258 - 29008777
Alignment:
| Q |
1 |
tagttttgtcaaaaagcttcacagcttcgtcaagttcaccgttcttggaatacacagtaatcatagtatttaaggaggttaaatgtttgagcctcatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29009258 |
tagttttgtcaaaaagcttcacagcttcatcaagttcaccgttcttggaatacacagtaatcatagtatttaaggaggttaaatgtttgagactcatttt |
29009159 |
T |
|
| Q |
101 |
ctcaaacaannnnnnnnnnnnnnnaaactgaccactcatcgcataacctttaatcatcaaattattagagatgagagttttatcccccaatccataaaag |
200 |
Q |
| |
|
|||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
29009158 |
ctcaaataattttttcgattttctaatccgaccactcatcgcataacctttaatcatcaaattattagagatgagagttttatctctcaatccataaaag |
29009059 |
T |
|
| Q |
201 |
atcatccccgcttctttgaccctccccattgaaacaaggccaccaatcagcgagtcagcaacgttcgaacaagcttcccctgccatgctttcataaactc |
300 |
Q |
| |
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|||||| | |||||||||| |||||| || || ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| | |||||||||| |
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|
| T |
29009058 |
atcatctcagcttctttgatcctcccgatcgagacaaggccaccaatcagcgagtcagcaacattcgaacaagcttctcctaccatgttctcataaactc |
29008959 |
T |
|
| Q |
301 |
tctttgcgtcgtctacagcatcagaaacacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgcaaagtccatg |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
29008958 |
tctttgcgtcgtctacagcatcacaaacacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgtaaagtccatg |
29008859 |
T |
|
| Q |
401 |
aacaaccttcccaacatacagaatcctaagtctagcacaaaccctcaaaacacaatccaaagtgaactcattaggcaacacc |
482 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |
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|
| T |
29008858 |
aacaaccttccctgcatacagaatcctaagtctagcacaaattcttataacacaatccaaagtgaactcattaggcaacacc |
29008777 |
T |
|
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