View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18951_high_4 (Length: 457)
Name: NF18951_high_4
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18951_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 441
Target Start/End: Original strand, 38579782 - 38580212
Alignment:
| Q |
14 |
gaagctggacgataaggcgctgggagcagttttatgaactaaaatttttaaatataaaaatccttg-aagtaaaatagcaatacttggcgtaagccagta |
112 |
Q |
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| T |
38579782 |
gaagctggacgataaggcgctgagagcagttttatgaactaaaatttttaaatataaaaatccttggaagtaaaatagcaatacttggcgtaagccagta |
38579881 |
T |
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| Q |
113 |
acaaagaagtcggacaagaaagcaactaaagatttttcttacaaagcattgtctctatgactgtatgcattactaaatgcttaattgtatggtatataag |
212 |
Q |
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| T |
38579882 |
acaaagaagtcggacaagaaagcaactaaagatttttcttacaaagcattgtctctatgactgtatgcattactaaatgcttaattgtatggtatataag |
38579981 |
T |
|
| Q |
213 |
tttgagatgcgtatcagtttttgtttgtgtcatccacaaatactgagcaatccataaatcaggttcatggagcctgtgatctctgacgcttcacaatttg |
312 |
Q |
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| T |
38579982 |
tttgagatgcgtatcagtttttgtttgtgtcatccacaaatactgagcaatccataaatcaggttcatggagcctgtgatctctgacgcttcacactttg |
38580081 |
T |
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| Q |
313 |
atggataggatccttgacctgcaatagaaggatagaatg-nnnnnnnnnnnnnntgttctgcaatcaattataaattac-agacattgaagtaaatagtt |
410 |
Q |
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| T |
38580082 |
atggataggatccttgacctgcaatagaaggatagaatgaaaaaagtaaaaaaatgttctgcaatcaattataaattacaagacattgaagtaaatagtt |
38580181 |
T |
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| Q |
411 |
gcataagcgtgagaaataaggaagccagagt |
441 |
Q |
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| T |
38580182 |
gcataagcgtgagaaataaggaagccagagt |
38580212 |
T |
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