View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18951_high_6 (Length: 372)

Name: NF18951_high_6
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18951_high_6
NF18951_high_6
[»] chr4 (12 HSPs)
chr4 (19-364)||(2373245-2373589)
chr4 (21-361)||(2367683-2368020)
chr4 (19-361)||(12124536-12124878)
chr4 (19-361)||(12126592-12126934)
chr4 (21-139)||(2472026-2472144)
chr4 (323-361)||(5106633-5106671)
chr4 (19-70)||(2460600-2460651)
chr4 (33-115)||(2486265-2486347)
chr4 (323-361)||(2518924-2518962)
chr4 (25-70)||(1547467-1547512)
chr4 (30-127)||(2621177-2621274)
chr4 (33-73)||(2391024-2391064)
[»] chr8 (1 HSPs)
chr8 (96-149)||(21240407-21240460)
[»] chr6 (3 HSPs)
chr6 (107-154)||(7132462-7132509)
chr6 (107-154)||(7135385-7135432)
chr6 (111-151)||(14821544-14821584)
[»] chr5 (1 HSPs)
chr5 (30-136)||(39252919-39253025)
[»] chr1 (3 HSPs)
chr1 (107-149)||(9581849-9581891)
chr1 (30-71)||(15837979-15838020)
chr1 (118-151)||(33161355-33161388)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 2373245 - 2373589
Alignment:
Q  19 tctccattgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtccgataaaacaattcctttccttaatcgcctcttcca 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2373245 tctccgttgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtc-gataaaacaattcctttccttaatcgcctcttcca 2373343  T
Q  119 aaggttccccaacctcacctcccttgacctctcaaaaggtagaaaccgcaacttgcttctctaccacaccgaagatttccctttagacttcaaatcactc 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  2373344 aaggttccccaacctcacctccctcgacctctcaaaaggtagaaacctcaacttgcttctctgccacaccgaagatttcccttcaaacttcaaatcactc 2373443  T
Q  219 aatttttccaacaacggtgacattcatacaggtacgttggtaattttgtccgaaaagatgaaatatttgacctctctcacctgttttggaatgaatagtg 318  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2373444 aatttttccaacaatggtgacattcatataggtacgttggtaattttgtccgaaaagatgaaatatttgacctctctcacttgttttggaatgaatagtg 2373543  T
Q  319 ttcgcaagagtgatctcttctacattgctgattgtttccctttgct 364  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  2373544 ttcacaagagtgatctcttcttcattgctgattgtttccctttgct 2373589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 21 - 361
Target Start/End: Original strand, 2367683 - 2368020
Alignment:
Q  21 tccattgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtccgataaaacaattcctttccttaatcgcctcttccaaa 120  Q
    ||||| || |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  2367683 tccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccatagcaatgtccgataaaacaatccctttcctttatcgccttttccaaa 2367782  T
Q  121 ggttccccaacctcacctcccttgacctctcaaaaggtagaaaccgcaacttgcttctctaccacaccgaagatttccctttagacttcaaatcactcaa 220  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||  |||||| || |||||||||  ||  ||||||||||| || ||||||| |||||    
T  2367783 ggttccccaacctcacatccctcgacttctcaaaaggtagaaaccttaacttgtttgtctaccacattgacaatttccctttaaacatcaaatcgctcaa 2367882  T
Q  221 tttttccaacaacggtgacattcatacaggtacgttggtaattttgtccgaaaagatgaaatatttgacctctctcacctgttttggaatgaatagtgtt 320  Q
    | |||||||| ||||   ||||||||||  || ||||  | | |||||| ||| ||||||| | ||||||||||| || ||||  ||||||| |||| ||    
T  2367883 tgtttccaaccacgg---cattcatacacataagttgcaattgttgtccaaaaggatgaaaaacttgacctctcttacttgttccggaatgattagtatt 2367979  T
Q  321 cgcaagagtgatctcttctacattgctgattgtttcccttt 361  Q
    | ||||||||||||||||| |||||||||||||||||||||    
T  2367980 cacaagagtgatctcttcttcattgctgattgtttcccttt 2368020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 12124878 - 12124536
Alignment:
Q  19 tctccattgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtccgataaaacaattcctttccttaatcgcctcttcca 118  Q
    |||||||||| |||||||||||||||||||||||||| | ||||| ||| ||||| ||||| || ||| ||||||| ||||||||| | |||||||||||    
T  12124878 tctccattgtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatctctgatgaaacaatccctttccttgaccgcctcttcca 12124779  T
Q  119 aaggttccccaacctcacctcccttgacctctcaaaaggtagaaaccgcaacttgcttctctaccacaccgaagatttccctttagacttcaaatcactc 218  Q
    ||||||||||||||| |  ||||| |||||||| |||| |||||||   |||||||||||   |||||  ||| ||||||| |||| | ||||||| |||    
T  12124778 aaggttccccaaccttagatccctcgacctctcgaaagctagaaacgtaaacttgcttcttggccacaatgaatatttcccattaggcatcaaatcgctc 12124679  T
Q  219 aatttttccaacaacggtgacattcatacaggtacgttggtaattttgtccgaaaagatgaaatatttgacctctctcacctgttttggaatgaatagtg 318  Q
    ||| |||||||||| |||||| || || ||| |  ||||||| |||||||| ||||||||||| |||||||||||||||| ||||   |||||| | ||     
T  12124678 aatatttccaacaaaggtgaccttgatgcagatgtgttggtagttttgtccaaaaagatgaaaaatttgacctctctcacttgttccagaatgatttgta 12124579  T
Q  319 ttcgcaagagtgatctcttctacattgctgattgtttcccttt 361  Q
    | |  |||||||||||||||| |||||||||||||||||||||    
T  12124578 tgctaaagagtgatctcttcttcattgctgattgtttcccttt 12124536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 12126934 - 12126592
Alignment:
Q  19 tctccattgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtccgataaaacaattcctttccttaatcgcctcttcca 118  Q
    |||||||||| |||||||||||||||||||||||||| | ||||| ||||||||| ||| | || ||| ||| ||| ||||||||| | ||||| ||| |    
T  12126934 tctccattgtctccaaacaatttctctccatcaccaaccgtctcctattctccatcgcagtctcagatgaaaaaatccctttccttgaccgcctattcaa 12126835  T
Q  119 aaggttccccaacctcacctcccttgacctctcaaaaggtagaaaccgcaacttgcttctctaccacaccgaagatttccctttagacttcaaatcactc 218  Q
    ||||||||||||||| |  ||||| |||||||| |||| ||||||||  ||||||||||| | || ||| |||||||||||||||| | ||||||| |||    
T  12126834 aaggttccccaaccttagatccctcgacctctcgaaagctagaaacctaaacttgcttctttgccgcactgaagatttccctttaggcatcaaatctctc 12126735  T
Q  219 aatttttccaacaacggtgacattcatacaggtacgttggtaattttgtccgaaaagatgaaatatttgacctctctcacctgttttggaatgaatagtg 318  Q
    |||||||||||||| |||| |||||||  || |  | ||||| |||||||| || |||||||| |||||||||||||||  ||||  ||||||  ||||     
T  12126734 aatttttccaacaaaggtggcattcatggagatgtgatggtacttttgtccaaacagatgaaaaatttgacctctctcatttgttccggaatgtttagta 12126635  T
Q  319 ttcgcaagagtgatctcttctacattgctgattgtttcccttt 361  Q
    |||  ||||||||||||||||  ||||| ||||||| ||||||    
T  12126634 ttcaaaagagtgatctcttctttattgcagattgttgcccttt 12126592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 2472144 - 2472026
Alignment:
Q  21 tccattgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtccgataaaacaattcctttccttaatcgcctcttccaaa 120  Q
    ||||| || |||||||| ||| ||||||||||||||| |||| |||||||| |  |||| | |  | ||||||| ||||||||| ||| ||||||| |||    
T  2472144 tccatggtctccaaacagtttttctccatcaccaatcgtctctgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaa 2472045  T
Q  121 ggttccccaacctcacctc 139  Q
    ||||||| |||||||||||    
T  2472044 ggttccctaacctcacctc 2472026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 361
Target Start/End: Original strand, 5106633 - 5106671
Alignment:
Q  323 caagagtgatctcttctacattgctgattgtttcccttt 361  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  5106633 caagagtgatctcttcttcattgctgattgtttcccttt 5106671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 2460651 - 2460600
Alignment:
Q  19 tctccattgtttccaaacaatttctctccatcaccaatcatctccgattctc 70  Q
    ||||||| || |||||||| || |||||||||||||||| ||||||||||||    
T  2460651 tctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctc 2460600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 2486347 - 2486265
Alignment:
Q  33 aaacaatttctctccatcaccaatcatctccgattctccatagcaatgtccgataaaacaattcctttccttaatcgcctctt 115  Q
    ||||| ||||| ||||||||||| | ||||||||||||  |  |||| ||||| |||||||| ||||||||| |||| |||||    
T  2486347 aaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttcatcgtctctt 2486265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 361
Target Start/End: Complemental strand, 2518962 - 2518924
Alignment:
Q  323 caagagtgatctcttctacattgctgattgtttcccttt 361  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  2518962 caagaatgatctcttcttcattgctgattgtttcccttt 2518924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 1547467 - 1547512
Alignment:
Q  25 ttgtttccaaacaatttctctccatcaccaatcatctccgattctc 70  Q
    |||| ||||||||||| |||||||||||||| | ||||||||||||    
T  1547467 ttgtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 2621177 - 2621274
Alignment:
Q  30 tccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtccgataaaacaattcctttccttaatcgcctcttccaaaggttccc 127  Q
    |||||||| ||| | ||||||||||| | ||| || ||||||||  |||| ||||||||||| || |||||| ||  |||||||||| | ||||||||    
T  2621177 tccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccc 2621274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 2391024 - 2391064
Alignment:
Q  33 aaacaatttctctccatcaccaatcatctccgattctccat 73  Q
    |||||||| ||||||||||||||  ||||||||||||||||    
T  2391024 aaacaattactctccatcaccaacaatctccgattctccat 2391064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 21240460 - 21240407
Alignment:
Q  96 cctttccttaatcgcctcttccaaaggttccccaacctcacctcccttgacctc 149  Q
    ||||| ||| |||||||||||||||||||| || |||| |||||||||||||||    
T  21240460 ccttttcttgatcgcctcttccaaaggttcacccacctgacctcccttgacctc 21240407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 7132509 - 7132462
Alignment:
Q  107 tcgcctcttccaaaggttccccaacctcacctcccttgacctctcaaa 154  Q
    ||||||| || |||||||| ||||||||| ||||||||||||||||||    
T  7132509 tcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaa 7132462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 7135432 - 7135385
Alignment:
Q  107 tcgcctcttccaaaggttccccaacctcacctcccttgacctctcaaa 154  Q
    ||||||| || |||||||| ||||||||| ||||||||||||||||||    
T  7135432 tcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaa 7135385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 14821584 - 14821544
Alignment:
Q  111 ctcttccaaaggttccccaacctcacctcccttgacctctc 151  Q
    |||||| |||||||| |||||||||||||||||||| ||||    
T  14821584 ctcttcaaaaggttcaccaacctcacctcccttgacttctc 14821544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 39252919 - 39253025
Alignment:
Q  30 tccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtccgataaaacaattcctttccttaatcgcctcttccaaaggttcccca 129  Q
    |||| ||| ||||||||||||| ||| | |||||||| |||| | |||||  ||||| ||||||| |||| ||||  ||  |||||  ||||||||||||    
T  39252919 tccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggttcccca 39253018  T
Q  130 acctcac 136  Q
    |||||||    
T  39253019 acctcac 39253025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 9581891 - 9581849
Alignment:
Q  107 tcgcctcttccaaaggttccccaacctcacctcccttgacctc 149  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||    
T  9581891 tcgcctcttccaaagattcaccaacctcacctccctcgacctc 9581849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 15837979 - 15838020
Alignment:
Q  30 tccaaacaatttctctccatcaccaatcatctccgattctcc 71  Q
    |||||||| ||||||||||||||||| | |||||||||||||    
T  15837979 tccaaacagtttctctccatcaccaaccgtctccgattctcc 15838020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 33161388 - 33161355
Alignment:
Q  118 aaaggttccccaacctcacctcccttgacctctc 151  Q
    |||||||| |||||||||||||||||||||||||    
T  33161388 aaaggttcaccaacctcacctcccttgacctctc 33161355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University