View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18951_low_12 (Length: 288)
Name: NF18951_low_12
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18951_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 23081042 - 23081302
Alignment:
| Q |
13 |
atactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatgg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23081042 |
atactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatgg |
23081141 |
T |
|
| Q |
113 |
aagcattgtattcatatcctcaattgcaggattcaaagcccggccttttgcttctgtctatgcagcctctaaaggtaatttaattatatatcttcatatt |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23081142 |
aagcattgtattcatatcctcaattgcaggactcaaagcctggccttttgcttctgtctatgcagcctctaaaggtaatttaattatatatcttcatata |
23081241 |
T |
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| Q |
213 |
annnnnnngagatgaattatatatcttcatacctggaactgaattgcagaagataattaat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23081242 |
ttttttttgagatgaattatatatcttcatacctggaactgaattgcagaagataattaat |
23081302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 23091940 - 23092141
Alignment:
| Q |
13 |
atactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatgg |
112 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
23091940 |
atactgatgaagatatagcatctacaattggtaccaattttgtgtctagttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatgg |
23092039 |
T |
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| Q |
113 |
aagcattgtattcatatcctcaattgcaggattcaaagcccggccttttgcttctgtctatgcagcctctaaaggtaa-tttaattatatatcttcatat |
211 |
Q |
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|||||| |||| ||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23092040 |
aagcatagtatacatatcctcaatttcaggtctcaaagccttgccttttgtttctgtctatgcagcctctaaaggtaattttaattatatatcttcatat |
23092139 |
T |
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| Q |
212 |
ta |
213 |
Q |
| |
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|| |
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| T |
23092140 |
ta |
23092141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 23026446 - 23026557
Alignment:
| Q |
7 |
tagataatactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctgg |
106 |
Q |
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|||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
23026446 |
tagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctgg |
23026545 |
T |
|
| Q |
107 |
aaatggaagcat |
118 |
Q |
| |
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| |||||||||| |
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| T |
23026546 |
atatggaagcat |
23026557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 23035250 - 23035361
Alignment:
| Q |
7 |
tagataatactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctgg |
106 |
Q |
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|
|||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
23035250 |
tagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctgg |
23035349 |
T |
|
| Q |
107 |
aaatggaagcat |
118 |
Q |
| |
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| |||||||||| |
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| T |
23035350 |
atatggaagcat |
23035361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 23069127 - 23069244
Alignment:
| Q |
13 |
atactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatgg |
112 |
Q |
| |
|
|||||| ||||||| | |||| |||||| |||| || |||| ||| |||| ||||||||||||||||||||||| ||| ||||| |||||||| |||| |
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| T |
23069127 |
atactgctgaagatgtgacaaatacaatgggtattaactttgaatctagttaccatttgtgtcaacttgcacacccacttttaaaagaatctggatatgg |
23069226 |
T |
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| Q |
113 |
aagcattgtattcatatc |
130 |
Q |
| |
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|||||||||| |||||| |
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| T |
23069227 |
gagcattgtatccatatc |
23069244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 30798661 - 30798737
Alignment:
| Q |
63 |
tatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatcctcaattgc |
139 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||| || ||||| ||||||||||||||||| ||||| ||||| |
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| T |
30798661 |
tatcatttgtgtcaacttacacatcctcttctaaaggcatatggaatgggaagcattgtattcatttcctctattgc |
30798737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 30706270 - 30706209
Alignment:
| Q |
72 |
tgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatcctc |
133 |
Q |
| |
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|||||||| ||| | |||||||| ||| |||||||||||||||||||||| ||||| ||||| |
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| T |
30706270 |
tgtcaactagcatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctc |
30706209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 30790311 - 30790368
Alignment:
| Q |
70 |
tgtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcat |
127 |
Q |
| |
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|||| |||||| |||| |||||||||||| ||||||||||||| |||||||| ||||| |
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| T |
30790311 |
tgtgccaactttcacatcctcttctaaaagaatctggaaatggtagcattgtgttcat |
30790368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 30699420 - 30699381
Alignment:
| Q |
87 |
cctcttctaaaacaatctggaaatggaagcattgtattca |
126 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||| |
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| T |
30699420 |
cctcttcttaaagaatctggaaatggaagcattgtattca |
30699381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 30719238 - 30719192
Alignment:
| Q |
87 |
cctcttctaaaacaatctggaaatggaagcattgtattcatatcctc |
133 |
Q |
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|||||||| ||| |||||||||||||||||||||| ||||| ||||| |
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| T |
30719238 |
cctcttcttaaagaatctggaaatggaagcattgttttcatttcctc |
30719192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 30868506 - 30868431
Alignment:
| Q |
63 |
tatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatggaagcattgtattcatatcctcaattgc |
139 |
Q |
| |
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||||||||||| |||||| || | ||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
30868506 |
tatcatttgtgccaacttaca-atcctcttctaaagacatctggaatgggaagcattgtattcatttcctctattgc |
30868431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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