View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18951_low_15 (Length: 262)
Name: NF18951_low_15
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18951_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 63 - 243
Target Start/End: Original strand, 3232315 - 3232495
Alignment:
| Q |
63 |
ttaatcattgttaatataaaatagcattagatattgaattgatcactaaactcactctaaagcccttgcagctccaagtgcgaccttaatgcgtgcattc |
162 |
Q |
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| T |
3232315 |
ttaatcattgttaatataaaatagcattagatattgaattgatcactaaactcactctaaagcccttgcagctccaagtgcgaccttaatgcgtgcattc |
3232414 |
T |
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| Q |
163 |
catggaaatttaatacagtgttcatcgtctccttgaagtgcatcatgtagtgttccattattacaatactcatatataagt |
243 |
Q |
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| T |
3232415 |
catggaaatttaatacagtgttcatcgtctccttgaagtgcatcatgtagtgttccattattacaatactcatatataagt |
3232495 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 3232265 - 3232295
Alignment:
| Q |
13 |
attctcatgcagatacctggtccattgaaag |
43 |
Q |
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| T |
3232265 |
attctcatgcagatacctggtccattgaaag |
3232295 |
T |
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