View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18951_low_17 (Length: 235)
Name: NF18951_low_17
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18951_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5375864 - 5376088
Alignment:
| Q |
1 |
ctttaacaaggatacttaatttttctttttaatatactctagatgattatataaatgcatgaaatttgcgtttgtatccgaacccacatgctcatatctc |
100 |
Q |
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| T |
5375864 |
ctttaacaaggatacttaatttttctttttaatatactctagatgattatataaatgcatgaaatttgcatttgtatccgaacccacatgctcatatctc |
5375963 |
T |
|
| Q |
101 |
atatcaccttctggacacgatatcaatcactttgt----ttacaatactgagtatgctcaagcatgcattctttacgttgtttaatgccaatctttcaaa |
196 |
Q |
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| T |
5375964 |
atatcaccttctggacacgatatcaatcactttgtttaattacaatactgagtatgctcaagcatgcattctttgcgttgtttaatgccaatctttcaaa |
5376063 |
T |
|
| Q |
197 |
tgttgcaggaccaataactaatatt |
221 |
Q |
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||||||||||||||||||||||||| |
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| T |
5376064 |
tgttgcaggaccaataactaatatt |
5376088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 5368746 - 5368546
Alignment:
| Q |
9 |
aggatacttaatttttctttttaatatactctagatgattatataaatgcatgaaatttgcgtttgtat---ccgaacc--cacatgctcatatctcata |
103 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| |||| ||| | ||||| || |||||||||| |||| |
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| T |
5368746 |
aggatactcaatttttcttttcaatatactctagatgattatataaatgcatgtaatttgtgtttttatatgctgaacctgcatatgctcatatgtcat- |
5368648 |
T |
|
| Q |
104 |
tcaccttctggacacgatatcaatcactttgtttacaatactgagtatgctcaagcatgcattctttacgttgtttaatgccaatctttcaaatgttgca |
203 |
Q |
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||| ||| |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5368647 |
-cacattcaggacgcgatatcaatcactttgttttcaatat---------------atgcattctttacgttgtttaatgccaatctttcaaatgttgca |
5368564 |
T |
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| Q |
204 |
ggaccaataactaatatt |
221 |
Q |
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|||||||||||||||||| |
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| T |
5368563 |
ggaccaataactaatatt |
5368546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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