View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18951_low_2 (Length: 503)
Name: NF18951_low_2
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18951_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 48020953 - 48020474
Alignment:
| Q |
18 |
gtttcaacattgatgccagccatgccaaccgcaaatttctcttttcttcccatctccttaacgtttgtgcaaccttgaacagctagcatcataaaatcaa |
117 |
Q |
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| T |
48020953 |
gtttcaacattgatgccagccatgccaaccgcaaatttctcttttcttcccatctccttaacgtttgtgcaaccttgaacagctagcatcataaaatcaa |
48020854 |
T |
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| Q |
118 |
tgtgtttatagctcattcatcatatatgtaccattattactactatcatatacatgaataaaatgcaatcataacatgatagtccaagagggtctctctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020853 |
tgtgtttatagctcattcatcatatatgtaccattattactactatcatatacatgaataaaatgcaatcataacatgatagtccaagagggtctctctt |
48020754 |
T |
|
| Q |
218 |
agctaaaaatttaattaacctcacccaccatcctttcctcaccattaatacaatatttaagacaggaaaagaaagagaaatagaaagagaaggnnnnnnn |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020753 |
agctaaaaatttaattaacctcacccaccatcctttcctcaccattaatacaatatttaagacaggaaaagaaagagaaatagaaagagaaggttttttt |
48020654 |
T |
|
| Q |
318 |
accttcctattttcttcctctcaagaaaagtcgtttttcaatttcccctttcattgttaggtttatttgtttgggtatatggtaaaatggaaatgtccat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020653 |
accttcctattttcttcctctcaagaaaagtcgtttttcaatttcccttttcattgttaggtttatttgtttgggtatatggtaaaatggaaatgtccat |
48020554 |
T |
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| Q |
418 |
gaaagttagatttactttgtgctgattgcattactagtattggttttgtagctcctttgtttttacctatttcttctctct |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48020553 |
gaaagttagatttactttgtgctgattgcattactagtattggttttgtagctccttt-tttttacctatttcttctctct |
48020474 |
T |
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