View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18951_low_20 (Length: 221)
Name: NF18951_low_20
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18951_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 6633972 - 6634124
Alignment:
| Q |
1 |
ttttcttcggccaattttttctcttcttcagtaccagcagcatcatcagcattgattttctcgtcattctttatcgatgcatgttcatcttttttctcaa |
100 |
Q |
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| T |
6633972 |
ttttcttcggccaattttttctcttcttcagtatcagcagcaccatcagcattgattttctcgtcattctttatcgatgcatggtcatcttttttctcaa |
6634071 |
T |
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| Q |
101 |
cttcagcagaaggttcctccacaacatcattctccttcttttcttcatcattt |
153 |
Q |
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| T |
6634072 |
cttcagcagaaggttcctccacaacatcctcctctttctttccttcatcattt |
6634124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 6634056 - 6634132
Alignment:
| Q |
145 |
tcatcatttttctcaatttctttagaaggttcctccacaacatcctcctctttctttccttcatcatttattttctc |
221 |
Q |
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||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6634056 |
tcatcttttttctcaacttcagcagaaggttcctccacaacatcctcctctttctttccttcatcatttattttctc |
6634132 |
T |
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