View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18951_low_5 (Length: 446)
Name: NF18951_low_5
Description: NF18951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18951_low_5 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: scaffold1157 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 490 - 912
Alignment:
| Q |
13 |
aagaatattatgtctgtaagttcatttctttaaatggattcacttaaccaaaattcattttaattaatcgatagaaacgttcgttatattacaaatttaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
490 |
aagaatattatgtctgtaagttcatttctttaaatggattcacttaaccaaaattcattttaattaatcgatagaaacgttcgttgtattacaaatttaa |
589 |
T |
|
| Q |
113 |
ctgattgtaataacttttatggacttgcttaggagacgattcaaacaggtttattcctaatacaaaaccgagtagtggtaagtgtattca---ttatctt |
209 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
590 |
ctgattgtaataacttttatggagttgcttaggagacgattcaaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcattgttatctt |
689 |
T |
|
| Q |
210 |
ttattttctcactc---aagtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaa |
306 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
690 |
ttatctgttcactcacaaagtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaa |
789 |
T |
|
| Q |
307 |
ttgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtgagtaatcttcatctaannnnnnnncttcattagtagaaa |
406 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
790 |
ttgctatgacatcaatgtctctattcaaagctattggacctgctgcaggtggtacaatgtgagtaatcttcatctaa-tttttttcttcattagtagaaa |
888 |
T |
|
| Q |
407 |
ttttaatctacatgattttttact |
430 |
Q |
| |
|
|||||||||||||| ||||||||| |
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|
| T |
889 |
ttttaatctacatgcttttttact |
912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 16568645 - 16568223
Alignment:
| Q |
13 |
aagaatattatgtctgtaagttcatttctttaaatggattcacttaaccaaaattcattttaattaatcgatagaaacgttcgttatattacaaatttaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
16568645 |
aagaatattatgtctgtaagttcatttctttaaatggattcacttaaccaaaattcattttaattaatcgatagaaacgttcgttgtattacaaatttaa |
16568546 |
T |
|
| Q |
113 |
ctgattgtaataacttttatggacttgcttaggagacgattcaaacaggtttattcctaatacaaaaccgagtagtggtaagtgtattca---ttatctt |
209 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
16568545 |
ctgattgtaataacttttatggagttgcttaggagacgattcaaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcattgttatctt |
16568446 |
T |
|
| Q |
210 |
ttattttctcactc---aagtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaa |
306 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16568445 |
ttatctgttcactcacaaagtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaa |
16568346 |
T |
|
| Q |
307 |
ttgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtgagtaatcttcatctaannnnnnnncttcattagtagaaa |
406 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
16568345 |
ttgctatgacatcaatgtctctattcaaagctattggacctgctgcaggtggtacaatgtgagtaatcttcatctaa-tttttttcttcattagtagaaa |
16568247 |
T |
|
| Q |
407 |
ttttaatctacatgattttttact |
430 |
Q |
| |
|
|||||||||||||| ||||||||| |
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|
| T |
16568246 |
ttttaatctacatgcttttttact |
16568223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 16527053 - 16526638
Alignment:
| Q |
13 |
aagaatattatgtctgtaagttcatttctttaaatggattcacttaaccaaaattcattttaattaatcgatagaaacgttcgttatattacaaatttaa |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| ||||||| | ||| |||| || |||||||||||||| |
|
|
| T |
16527053 |
aagaatattatgtctgtaagttcatctctttaaatggattcaattaagcaaaattcattttaactaatcgaga-aaaggttctttgtattacaaatttaa |
16526955 |
T |
|
| Q |
113 |
ctgattgtaataacttttatggacttgcttaggagacgattcaaacaggtttattcctaatacaaaaccgagtagtggtaagtgtattcatt---atctt |
209 |
Q |
| |
|
||||||||| | |||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
16526954 |
ctgattgtattgt-ttttatggacttacttaggtcacgattacaacaggtttattcctaatacaaaaccgagtagtggtaagtgtagtcattgttatctt |
16526856 |
T |
|
| Q |
210 |
ttattttctcactca---agtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaa |
306 |
Q |
| |
|
|||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
16526855 |
ttatctgttcactcacaaagtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacaccaaagaggggcagctaatggcc |
16526756 |
T |
|
| Q |
307 |
ttgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtgagtaatcttcatctaannnnnnnncttcattagtagaaa |
406 |
Q |
| |
|
|| |||||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||| ||||| |
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|
| T |
16526755 |
tttctatgacagggatgtctctattcaaagccattggacctgctgcaggcggtacaatgtgagtagtctttctctaa------ttcttcattagcagaaa |
16526662 |
T |
|
| Q |
407 |
ttttaatctacatgattttttact |
430 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
16526661 |
ttttaatctacatgcttttttact |
16526638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 195 - 430
Target Start/End: Complemental strand, 16518326 - 16518094
Alignment:
| Q |
195 |
tgtattcattatcttttattttctcactcaagtttgatattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacatcaaagaggag |
294 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
16518326 |
tgtattcattatcttttgttttatcaca-aagtttggtattagtttttgatggatttgtggcatattgatttggaaaacaggaacaacaccaaagagggg |
16518228 |
T |
|
| Q |
295 |
cagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtgagtaatcttcatctaannnnnnnnctt |
394 |
Q |
| |
|
| |||||||| ||| |||||||| | ||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
16518227 |
ctgctaatggcatttctatgacagctatgtctctattcaaagcgattggacctgctgcaggtggtacaatgtgagtagtcttcatctaa--ttttttctt |
16518130 |
T |
|
| Q |
395 |
cattagtagaaattttaatctacatgattttttact |
430 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16518129 |
cattagtagaaattttaatctacatgcttttttact |
16518094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 231 - 383
Target Start/End: Complemental strand, 16587134 - 16586984
Alignment:
| Q |
231 |
atattagtttttgatgtaattgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactat |
330 |
Q |
| |
|
||||||||| |||||| || |||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||| |||| |
|
|
| T |
16587134 |
atattagttgttgatggaagtgtgacat--tgatttgcaaaacaggaacaacaccaaagaggagcagctaatggaatttctatgacagctatgtctctat |
16587037 |
T |
|
| Q |
331 |
tcaaaactattggacctgctgcaggtggtacaatgtgagtaatcttcatctaa |
383 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
16587036 |
tcaaagctattggacctgctgcaggtggtacaatgtgagtactcttcctctaa |
16586984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 370
Target Start/End: Complemental strand, 26368031 - 26367930
Alignment:
| Q |
269 |
aaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtga |
368 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||| ||||| || |||| ||||||| || ||||| |
|
|
| T |
26368031 |
aaaataggaacaacatcaaagaggggcagctaatggcattgctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtga |
26367932 |
T |
|
| Q |
369 |
gt |
370 |
Q |
| |
|
|| |
|
|
| T |
26367931 |
gt |
26367930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 16587333 - 16587177
Alignment:
| Q |
39 |
tctttaaatggattcacttaaccaaaattcattttaattaatcgatagaaacgttcgttatattacaaatttaactgattgtaataacttttatggactt |
138 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||| |||| ||| | || || ||||| |||||| ||| |||||| || ||| ||||| |
|
|
| T |
16587333 |
tctttaaatggattcaattaaccaaaattcagtttaattaattgata-aaaggctctttttattaaaaatttgactcattgtattatttttcatgga--- |
16587238 |
T |
|
| Q |
139 |
gcttaggagacgattcaaacaggtttattcctaatacaaaaccgagtagtggtaagtgtatt |
200 |
Q |
| |
|
|||||| ||||||| ||| || |||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
16587237 |
-cttaggtgacgattacaaccggattattccttgtacaaaaccgagtagtggttagtatatt |
16587177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 16518421 - 16518367
Alignment:
| Q |
156 |
aacaggtttattcctaatacaaaaccgagtagtggtaagtgtattcattatcttt |
210 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
16518421 |
aacaggtttattccttatacagaaccgagcagtggtaagtgtattcattatcttt |
16518367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 370
Target Start/End: Original strand, 2609533 - 2609632
Alignment:
| Q |
271 |
aacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtgagt |
370 |
Q |
| |
|
||||||| |||| ||||||||| |||||||| || ||||||||||| ||||||| |||||||||| ||||| || |||| ||||||| || ||||||| |
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|
| T |
2609533 |
aacaggagcaacgtcaaagaggggcagctaacggcattgctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagt |
2609632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 370
Target Start/End: Original strand, 39163047 - 39163145
Alignment:
| Q |
272 |
acaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtgagt |
370 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||| | |||||| ||||||||| || || ||||||| ||| ||| || ||||||| |
|
|
| T |
39163047 |
acaggaacaacatcaaagaggggcagctaatggcattgcaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagt |
39163145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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