View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18952_high_4 (Length: 295)
Name: NF18952_high_4
Description: NF18952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18952_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 3572924 - 3573203
Alignment:
| Q |
16 |
atcagcataattgtatacctaatcagaccaagaacaatatctaatctaatatccgctcaacgcaaccagacaaatggactcatatttgtaacaaaatgtt |
115 |
Q |
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| T |
3572924 |
atcagcataattgtatacctaatcagaccaagaacaatatctaatctaatatccgctcaacgcaaccagacaaatggactcatatttgtaacaaaatgtt |
3573023 |
T |
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| Q |
116 |
gaggtaaatgaaatcaatgtatgttaacctctcaggctctcagctgagaataacaacacaagcttctttgtctgacaatttatctaggatgcataagtga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3573024 |
gaggtaaatgaaatcaatgtatgttaacctctcaggctctcagctgagaataacatcacaagcttctttgtctgacaatttatctaggatgcataagtaa |
3573123 |
T |
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| Q |
216 |
aggtactaggcagaatcatgaaaataccccattttttgagatattttccgggtggcagggttccagaatcggagccagta |
295 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573124 |
aggtactaggcagaatcacgaaaataccccattttttgagatattttccgggtggcagggttccagaatcggagccagta |
3573203 |
T |
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