View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18952_high_8 (Length: 249)
Name: NF18952_high_8
Description: NF18952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18952_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 3573508 - 3573276
Alignment:
| Q |
5 |
atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaatcaaaggagttgaccc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573508 |
atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaatcaaaggagttgaccc |
3573409 |
T |
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| Q |
105 |
tgacggtagggacgatctctatgaggaagattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573408 |
tgacggtagggacgatctctatgaggaagattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattct |
3573309 |
T |
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| Q |
205 |
cactctctattgaatcaaaatcattacaatatt |
237 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3573308 |
cactctctattgaatcaaaatcattacaatatt |
3573276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 1687034 - 1686949
Alignment:
| Q |
133 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattgaa |
218 |
Q |
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| T |
1687034 |
gattacagtttcattccatatcctatatcttgtttactcgataacctgtcgattacccttgttgctgatcctcactctctattgaa |
1686949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 3565053 - 3565144
Alignment:
| Q |
133 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattgaatcaaaa |
224 |
Q |
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| T |
3565053 |
gattacagtatcattccatatcctatacctcgtttactcgataacccgtcatttacggttgttgctgatcctcactctatgttgaatgaaaa |
3565144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 3557035 - 3557126
Alignment:
| Q |
133 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattgaatcaaaa |
224 |
Q |
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|||||| ||||||||||||| |||||| | |||||||| |||||||| || ||||||||| || ||||| ||| ||||||||||||| |||| |
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| T |
3557035 |
gattacggtatcattccataccctataccccgtttactcgataacccgtcctttacccttatcactgatcctcgctctctattgaatgaaaa |
3557126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 3556907 - 3556954
Alignment:
| Q |
5 |
atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatc |
52 |
Q |
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| T |
3556907 |
atcccaattttgtgaaattccatctcaagagatcaaaatcacaaaatc |
3556954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 3564925 - 3564972
Alignment:
| Q |
5 |
atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatc |
52 |
Q |
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|||||||||| |||||||| |||||| |||||||||||||||||||| |
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| T |
3564925 |
atcccaattttgtgaaattccatctcatgaaatcaaaatcacaaaatc |
3564972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 39379828 - 39379744
Alignment:
| Q |
133 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattga |
217 |
Q |
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|||||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||| |||||| |||||| |||||||| |
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| T |
39379828 |
gattacagtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga |
39379744 |
T |
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