View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18952_low_1 (Length: 760)
Name: NF18952_low_1
Description: NF18952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18952_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 441 - 743
Target Start/End: Original strand, 2492953 - 2493255
Alignment:
| Q |
441 |
accgtcgaccctttctcttcgcgacttcctgtcaccacgtcgacggagacgacgttgtttcaacgcgtaaatcaacgttcaaccgtggcttcacagtgat |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492953 |
accgtcgaccctttctcttcgcgacttcctgtcaccacgtcgacggagacgacgttgtttcaacgcgtaaatcaacgttcaaccgtggcttcacagtgat |
2493052 |
T |
|
| Q |
541 |
atctaaaatgcttcgtcgtatcaaacctctcgataactccgttatctctaaaggtgtttctgaagcttctaaagattctatgaaacaaactatttctact |
640 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2493053 |
atctaaaatgcttcgacgtatcaaacctctcgataactccgttatctctaaaggtgtttctgaagcttctaaagattctatgaaacaaactatttctact |
2493152 |
T |
|
| Q |
641 |
atgcttggtttgttaccttctgatcattttgatgttactgttagttttgagattcaaccccttcatcggttacttgtttcttctatcatcactgggtaat |
740 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2493153 |
atgcttggtttgttaccttctgatcattttgatgttactgttagttttgagattcaacctcttcatcggttacttgtttcttctatcatcactgggtaat |
2493252 |
T |
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| Q |
741 |
tat |
743 |
Q |
| |
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||| |
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| T |
2493253 |
tat |
2493255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 2492507 - 2492865
Alignment:
| Q |
1 |
taataaactatacactttattcttcnnnnnnntaaactatacactttcatctaaaattcaaacgagatctcgcaacagtgcataagcttcacgtgtttac |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492507 |
taataaactatacactttattcttcaaaaaa-taaactatacactttcatctaaaattcaaacgagatctcgcaacagtgcataagcttcacgtgtttac |
2492605 |
T |
|
| Q |
101 |
cttgaccgacgacactaatattattagattagacatattcatctgagttcaaacacgacacgcgatagttgtatatctgaatttca-agaaaggatttgt |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| | || |||||| | |
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| T |
2492606 |
cttgaccgacgacactaatattactagattagacatattcatctgagttcaaacacgacacgcgacagttgtacatgtgaatttcagacaatggatttat |
2492705 |
T |
|
| Q |
200 |
caaaaatgtttacccaacaaaacaaaaacataagctaaggtaaaggctaaggttcttgttccttttcatacacaacaacgatttcatcgttactctgtt- |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492706 |
caaaaatgtttacccaacaaaacaaaaacataagctaaggtaaaggctaaggttcttgttccttttcatacacaacaacgatttcatcgttactctgttg |
2492805 |
T |
|
| Q |
299 |
--gttgttgctg---ttcttcttccttccatggcagcatcaacaatttcatctcaaccct |
353 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492806 |
ttgttgttgttgttcttcttcttccttccatggcagcatcaacaatttcatctcaaccct |
2492865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 177
Target Start/End: Original strand, 2491578 - 2491709
Alignment:
| Q |
46 |
ttcatctaaaattcaaacgagatctcgcaacagtgcataagcttcacgtgtttaccttgaccgacgacactaatattattagattagacatattcatctg |
145 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| || |||| ||||||| || |||||||||||||||| |||| |||||| ||| ||||| |
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| T |
2491578 |
ttcatctaaaattcgaacgagatctcgcagttgtgcatgagtttcaggtgtttatgttagttgacgacactaatattactagaatagacacatttatctg |
2491677 |
T |
|
| Q |
146 |
agttcaaacacgacacgcgatagttgtatatc |
177 |
Q |
| |
|
| |||||||| |||| || ||||||||||| |
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| T |
2491678 |
aactcaaacacaacacctgacagttgtatatc |
2491709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 2492226 - 2492273
Alignment:
| Q |
108 |
gacgacactaatattattagattagacatattcatctgagttcaaaca |
155 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||||||||||||| |
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| T |
2492226 |
gacgacacaaatattattagattaaacacgttcatctgagttcaaaca |
2492273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 441 - 743
Target Start/End: Original strand, 27095540 - 27095842
Alignment:
| Q |
441 |
accgtcgaccctttctcttcgcgacttcctgtcaccacgtcgacggagacgacgttgtttcaacgcgtaaatcaacgttcaaccgtggcttcacagtgat |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27095540 |
accgtcgaccctttctcttcgcgacttcctgtcaccacgtcgacggagacgacgttgtttcaacgcgtaaatcaacgttcaaccgtggcttcacagtgat |
27095639 |
T |
|
| Q |
541 |
atctaaaatgcttcgtcgtatcaaacctctcgataactccgttatctctaaaggtgtttctgaagcttctaaagattctatgaaacaaactatttctact |
640 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27095640 |
atctaaaatgcttcgacgtatcaaacctctcgataactccgttatctctaaaggtgtttctgaagcttctaaagattctatgaaacaaactatttctact |
27095739 |
T |
|
| Q |
641 |
atgcttggtttgttaccttctgatcattttgatgttactgttagttttgagattcaaccccttcatcggttacttgtttcttctatcatcactgggtaat |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27095740 |
atgcttggtttgttaccttctgatcattttgatgttactgttagttttgagattcaacctcttcatcggttacttgtttcttctatcatcactgggtaat |
27095839 |
T |
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| Q |
741 |
tat |
743 |
Q |
| |
|
||| |
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|
| T |
27095840 |
tat |
27095842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 27095094 - 27095452
Alignment:
| Q |
1 |
taataaactatacactttattcttcnnnnnnntaaactatacactttcatctaaaattcaaacgagatctcgcaacagtgcataagcttcacgtgtttac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27095094 |
taataaactatacactttattcttcaaaaaa-taaactatacactttcatctaaaattcaaacgagatctcgcaacagtgcataagcttcacgtgtttac |
27095192 |
T |
|
| Q |
101 |
cttgaccgacgacactaatattattagattagacatattcatctgagttcaaacacgacacgcgatagttgtatatctgaatttca-agaaaggatttgt |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| | || |||||| | |
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|
| T |
27095193 |
cttgaccgacgacactaatattactagattagacatattcatctgagttcaaacacgacacgcgacagttgtacatgtgaatttcagacaatggatttat |
27095292 |
T |
|
| Q |
200 |
caaaaatgtttacccaacaaaacaaaaacataagctaaggtaaaggctaaggttcttgttccttttcatacacaacaacgatttcatcgttactctgtt- |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27095293 |
caaaaatgtttacccaacaaaacaaaaacataagctaaggtaaaggctaaggttcttgttccttttcatacacaacaacgatttcatcgttactctgttg |
27095392 |
T |
|
| Q |
299 |
--gttgttgctg---ttcttcttccttccatggcagcatcaacaatttcatctcaaccct |
353 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27095393 |
ttgttgttgttgttcttcttcttccttccatggcagcatcaacaatttcatctcaaccct |
27095452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 177
Target Start/End: Original strand, 27094165 - 27094296
Alignment:
| Q |
46 |
ttcatctaaaattcaaacgagatctcgcaacagtgcataagcttcacgtgtttaccttgaccgacgacactaatattattagattagacatattcatctg |
145 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| || |||| ||||||| || |||||||||||||||| |||| |||||| ||| ||||| |
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| T |
27094165 |
ttcatctaaaattcgaacgagatctcgcagttgtgcatgagtttcaggtgtttatgttagttgacgacactaatattactagaatagacacatttatctg |
27094264 |
T |
|
| Q |
146 |
agttcaaacacgacacgcgatagttgtatatc |
177 |
Q |
| |
|
| |||||||| |||| || ||||||||||| |
|
|
| T |
27094265 |
aactcaaacacaacacctgacagttgtatatc |
27094296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 27094813 - 27094860
Alignment:
| Q |
108 |
gacgacactaatattattagattagacatattcatctgagttcaaaca |
155 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
27094813 |
gacgacacaaatattattagattaaacacgttcatctgagttcaaaca |
27094860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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