View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18952_low_2 (Length: 669)
Name: NF18952_low_2
Description: NF18952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18952_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 38 - 650
Target Start/End: Original strand, 36956849 - 36957452
Alignment:
| Q |
38 |
aaatactaaaccagtcaaaaaatatatttttagtagaatattggaattagagggtaatggagaggaggtggcggtatgtattatatattttagcgcctaa |
137 |
Q |
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| T |
36956849 |
aaatactaaaccagtaaaaaaaaaaaattt-agtagaatattggaattagagggtaatggagaggaggtggcggtatgtattatatattttagcgcctaa |
36956947 |
T |
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| Q |
138 |
ataaaataattagttaagttgattgtgtcggttgcattggggaagtgaactaatacaaaccaacgtggctggcgaatttggattctacggaaaagtgaag |
237 |
Q |
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| T |
36956948 |
ataaaaaaattagttaagttgattgtgtcggttgcattggggaagtgaactaatacaaaccaacgtggctggcgaatttggattctacggaaaagtgaag |
36957047 |
T |
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| Q |
238 |
aattggacctggtctgcatggggtccactccatt-gccagctactactcagagctggagattggagaacacacaataattctaatgttttgtttggttga |
336 |
Q |
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| T |
36957048 |
aattggacctggtctgcatggggtccactccattagccagctactactcagagctggaga-------acacacaataattctaatgttttgtttggttga |
36957140 |
T |
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| Q |
337 |
aaaattaatcatgattttcatcattgaaattataagtattattgaattgatttgtcaaatagaaaatgcttactcctacatgtgcttaatttatgaaatt |
436 |
Q |
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| T |
36957141 |
aaaattaatcatgattttcatcattgaaattataagtat-attgaattgatttgtcaaatagaaaatgcttactcctacatgtgcttaatttatgaaatt |
36957239 |
T |
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| Q |
437 |
gaagacacgcaattgattatgatgactttatattgcaaagtagaggtagacaaaagtcttaaaaacaaactcttaaaaatatgctccaatggatcatgtc |
536 |
Q |
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| T |
36957240 |
gaagacacgcaattgattattatgactttatattgcaaagtagaggtagacaaaagtcttaaaa-caaacttttaaaaatatgctccaatggatcatgtc |
36957338 |
T |
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| Q |
537 |
tttaaaagaaattggcaaatctgatacggtcaaatgacaaatggatttacaatatcatcaattttatgaactaatttaacagagtttagagaaacatgat |
636 |
Q |
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| T |
36957339 |
tttaaaagaaattggcaaatctgatacggtcaaatgacaaatggatttacaatatcatcaattttatgaactaatttaacagagtttagagaaacatgat |
36957438 |
T |
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| Q |
637 |
agtttagtgtttca |
650 |
Q |
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| T |
36957439 |
agtttagtgtttca |
36957452 |
T |
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