View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18953_high_10 (Length: 227)
Name: NF18953_high_10
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18953_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 40593594 - 40593806
Alignment:
| Q |
1 |
caaattttatctaccttcatttcaatt---ctcaagagtcaagaccacattacaaggcacatgccaataatcatcctacaaagtcaagatgtctaagttg |
97 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40593594 |
caaattttatctaccttcatttcaataatgctcaagagtcaagaccacattacaaggcacatgccaataatcatcctacaaagtcaagatgtctaagttg |
40593693 |
T |
|
| Q |
98 |
cacaccttcaacaccatgcctaagttccaatgtcaatgaaacagatccaatccaagtgatctcacaacatcatgtccactatgtctatatggcaaaaaat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40593694 |
cacaccttcaacaccatgcctaagttccaatgtcaatgaaacagatccaatccaagtgatctcacaacatcatgtccactatgtctatatggcaaaaaat |
40593793 |
T |
|
| Q |
198 |
ccataagtgttcc |
210 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40593794 |
ccataagtgttcc |
40593806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University