View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18953_high_2 (Length: 474)

Name: NF18953_high_2
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18953_high_2
NF18953_high_2
[»] chr1 (9 HSPs)
chr1 (16-256)||(8752826-8753070)
chr1 (347-458)||(8753161-8753272)
chr1 (355-457)||(48713478-48713580)
chr1 (347-422)||(147092-147167)
chr1 (30-123)||(8713149-8713242)
chr1 (30-124)||(8725882-8725976)
chr1 (347-407)||(22020168-22020227)
chr1 (145-190)||(8726018-8726063)
chr1 (367-445)||(49873117-49873191)
[»] chr2 (3 HSPs)
chr2 (347-458)||(13437596-13437707)
chr2 (347-437)||(24407411-24407500)
chr2 (347-437)||(24411905-24411994)
[»] chr6 (3 HSPs)
chr6 (354-441)||(12877246-12877333)
chr6 (363-446)||(20758655-20758737)
chr6 (362-458)||(21182489-21182585)
[»] chr3 (1 HSPs)
chr3 (355-457)||(36666143-36666245)
[»] chr7 (3 HSPs)
chr7 (347-458)||(2432996-2433107)
chr7 (362-458)||(24509497-24509593)
chr7 (387-424)||(43697427-43697464)
[»] chr4 (2 HSPs)
chr4 (363-458)||(6683318-6683413)
chr4 (363-456)||(6686553-6686646)
[»] chr8 (3 HSPs)
chr8 (351-422)||(19385573-19385644)
chr8 (347-411)||(22320220-22320284)
chr8 (360-435)||(38061408-38061483)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 8752826 - 8753070
Alignment:
Q  16 gagaacgagtttagggatgtcagacatgatgcagatgatgtactctttcatgaacttgca----gagatccttatacaaaaactaccttatccttttgaa 111  Q
    ||||| |||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||    |||||||||||||| |||||||||||||||||||||    
T  8752826 gagaatgagtctagggatgtcatacatgatgtagatgctgtactctttcatgaacttgcatgcagagatccttatacacaaactaccttatccttttgaa 8752925  T
Q  112 aatgaaaatggttctaacgtaacttgtaaaatcgatggagaagaggtgaagtttgaaaagacgagcacaagtaaaagtagatccgattcaaattgtgaat 211  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8752926 aatgaaaatggttctaacgtaacttgtaaaattgatggagaagagatgaagtttgaaaagacgagcacaagtaaaagtagatccgatttaaattgtgaat 8753025  T
Q  212 taaatttgaattgctaaggtaagaaagtgtgtgacacatctgttg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8753026 taaatttgaattgctaaggtaagaaagtgtgtgacacatctgttg 8753070  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 347 - 458
Target Start/End: Original strand, 8753161 - 8753272
Alignment:
Q  347 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaag 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8753161 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctactaccgaatcaactatcaag 8753260  T
Q  447 atatgtagaacg 458  Q
    ||||||||||||    
T  8753261 atatgtagaacg 8753272  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 457
Target Start/End: Original strand, 48713478 - 48713580
Alignment:
Q  355 ttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaagatatgtag 454  Q
    |||| |||||||||||||| | ||||||| |||||||| |||  |||||||||||||||| |   ||| |||||| |||||||||||||||||| |||||    
T  48713478 ttttgagattgttgttgaaattgatcacccaccacaacgctaagaacatctttgacaacccagctaaatctgctatcgaatcaactatcaagatctgtag 48713577  T
Q  455 aac 457  Q
    |||    
T  48713578 aac 48713580  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 147092 - 147167
Alignment:
Q  347 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaa 422  Q
    |||||||||||| |||||||||||||| |||||  | |||||||||||||||||||||||||| || | |||||||    
T  147092 cttatctcttttgagattgttgttgaattagatatctgaccacaactctatcaacatctttgataagcaaatcaaa 147167  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 8713149 - 8713242
Alignment:
Q  30 ggatgtcagacatgatgcagatgatgtactctttcatgaacttgcagagatccttatacaaaaactaccttatccttttgaaaatgaaaatggt 123  Q
    |||||||| |||||||| ||||||||||||| | |||||  ||||||||||||||| | | |||||||||| |  | | |||||||||||||||    
T  8713149 ggatgtcacacatgatgtagatgatgtactcgtgcatgagattgcagagatccttacaaataaactaccttttagtgtggaaaatgaaaatggt 8713242  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 8725882 - 8725976
Alignment:
Q  30 ggatgtcagacatgatgcagatgatgtactctttcatgaacttgcagagatccttatacaaaaactaccttatccttttgaaaatgaaaatggtt 124  Q
    |||||||| |||||||| ||||||||||||| | |||||  |||||||||||||||   | ||||||||||||  | | |||||| |||||||||    
T  8725882 ggatgtcacacatgatgtagatgatgtactcgtgcatgagattgcagagatccttactaataaactaccttatagtgtggaaaataaaaatggtt 8725976  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 407
Target Start/End: Complemental strand, 22020227 - 22020168
Alignment:
Q  347 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatcttt 407  Q
    ||||||||||| | |||||||||| || ||||||| ||||||||||| |||||||||||||    
T  22020227 cttatctctttga-gattgttgttaaattagatcatcgaccacaactttatcaacatcttt 22020168  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 8726018 - 8726063
Alignment:
Q  145 gatggagaagaggtgaagtttgaaaagacgagcacaagtaaaagta 190  Q
    |||||||||||||||||||||| |||||  | ||||||||||||||    
T  8726018 gatggagaagaggtgaagtttggaaagagaaacacaagtaaaagta 8726063  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 445
Target Start/End: Original strand, 49873117 - 49873191
Alignment:
Q  367 tgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaa 445  Q
    ||||||| ||||||||  ||||||||||    |||||||||||||| |  ||||||||||||| ||||||||| |||||    
T  49873117 tgttgaattagatcacaaaccacaactc----aacatctttgacaatcagatcaaacctgctatcgaatcaaccatcaa 49873191  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 347 - 458
Target Start/End: Original strand, 13437596 - 13437707
Alignment:
Q  347 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaag 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||||| |||||||||| ||     
T  13437596 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatttttgataatcaaatcaaacctgctaccaaatcaactattaaa 13437695  T
Q  447 atatgtagaacg 458  Q
    || |||||||||    
T  13437696 atttgtagaacg 13437707  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 437
Target Start/End: Complemental strand, 24407500 - 24407411
Alignment:
Q  347 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatca 437  Q
    ||||||||||| | ||||| ||||||| || |||||||||||||| | |||||||||||||||||||| ||| ||| ||||||||||||||    
T  24407500 cttatctctttga-gattgctgttgaattatatcaccgaccacaaatttatcaacatctttgacaaccaaattaaatctgctaccgaatca 24407411  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 437
Target Start/End: Original strand, 24411905 - 24411994
Alignment:
Q  347 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatca 437  Q
    ||||||||||| | ||||||||||||| || ||||||||| |||| | |||||||||||||||||| | ||| ||| ||||||||||||||    
T  24411905 cttatctctttga-gattgttgttgaattatatcaccgactacaaatttatcaacatctttgacaagcaaattaaatctgctaccgaatca 24411994  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 12877246 - 12877333
Alignment:
Q  354 cttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaacta 441  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||    
T  12877246 cttttgagattgttgttgaattagatcatcgaccacaactctatcaacatctttgacaattaaatcaaacctgctactgaatcaacta 12877333  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 363 - 446
Target Start/End: Original strand, 20758655 - 20758737
Alignment:
Q  363 ttgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaag 446  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||| |||||||    
T  20758655 ttgttgttgaa-tagatcaccgaccacaactttatcaacatctttgacaaccaaataaaatctgctaccgaatcaattatcaag 20758737  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 21182489 - 21182585
Alignment:
Q  362 attgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaagatatgtagaacg 458  Q
    |||||||| ||| |||||||||||| |||||| |||||||||||||||  |||  |||||||||||||| |||||||||||||| || |||||||||    
T  21182489 attgttgtcgaattagatcaccgacaacaactttatcaacatctttgaacaccagatcaaacctgctacagaatcaactatcaaaatctgtagaacg 21182585  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 36666245 - 36666143
Alignment:
Q  355 ttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaagatatgtag 454  Q
    |||| |||||||||||||| |||||||    ||||||| |||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||| |||||    
T  36666245 ttttgagattgttgttgaattagatcataagccacaaccctatcaacgtctttgtcaaccaaatcaaacctgctaccggatcaactatcaagatctgtag 36666146  T
Q  455 aac 457  Q
    |||    
T  36666145 aac 36666143  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 347 - 458
Target Start/End: Complemental strand, 2433107 - 2432996
Alignment:
Q  347 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaag 446  Q
    |||||||||||| ||||| |||| ||| |||||||| |  ||||||||||||||||| |||||||||   ||||||| |||||| ||||||||||| |||    
T  2433107 cttatctcttttgagattattgtcgaattagatcactggtcacaactctatcaacatttttgacaactagatcaaacttgctactgaatcaactattaag 2433008  T
Q  447 atatgtagaacg 458  Q
    |||||| |||||    
T  2433007 atatgtggaacg 2432996  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 24509497 - 24509593
Alignment:
Q  362 attgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaagatatgtagaacg 458  Q
    |||||||| ||| ||||| |||||||||||||| |||||||||||| |  |||  |||||| ||||||| |||||||||||||| ||||||||||||    
T  24509497 attgttgtcgaattagatgaccgaccacaactccatcaacatctttaaacaccagatcaaagctgctacggaatcaactatcaaaatatgtagaacg 24509593  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 43697464 - 43697427
Alignment:
Q  387 cacaactctatcaacatctttgacaaccgaatcaaacc 424  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  43697464 cacagctctatcaacatctttgacaaccaaatcaaacc 43697427  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 458
Target Start/End: Complemental strand, 6683413 - 6683318
Alignment:
Q  363 ttgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaagatatgtagaacg 458  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||| ||    ||||||||||||||||||||||||||  |||| |||||||||    
T  6683413 ttgttgtcgaattagatcactgaccacaactctatcaacatctttgataagaagatcaaacctgctaccgaatcaactattgagatctgtagaacg 6683318  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 456
Target Start/End: Complemental strand, 6686646 - 6686553
Alignment:
Q  363 ttgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaatcaactatcaagatatgtagaa 456  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||||| |  |||||| ||||||| |||||||||||  |||| |||||||    
T  6686646 ttgttgtcgaattagatcaccgaccacaactctatcaacgtctttgacaagcagatcaaatctgctactgaatcaactattgagatttgtagaa 6686553  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 19385573 - 19385644
Alignment:
Q  351 tctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaa 422  Q
    |||||||| |||||||||||||| |||| |||||||||| ||| |||||||||||||||||| | |||||||    
T  19385573 tctcttttgagattgttgttgaattagaacaccgaccacgactttatcaacatctttgacaatcaaatcaaa 19385644  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 22320284 - 22320220
Alignment:
Q  347 cttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgaca 411  Q
    ||||||||||||  ||||||||||||| ||||||||  ||||||||||||||||||  |||||||    
T  22320284 cttatctcttttgtgattgttgttgaattagatcacaaaccacaactctatcaacacttttgaca 22320220  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 38061483 - 38061408
Alignment:
Q  360 agattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctgctaccgaat 435  Q
    ||||||||||  || ||||||||||||||| ||| ||||| ||||||| |||| | ||| ||||| ||||||||||    
T  38061483 agattgttgtgtaattagatcaccgaccactactttatcagcatctttaacaatcaaattaaacccgctaccgaat 38061408  T

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