View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18953_high_3 (Length: 395)
Name: NF18953_high_3
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18953_high_3 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 154 - 284
Target Start/End: Complemental strand, 35702767 - 35702637
Alignment:
| Q |
154 |
aattttgggactttatctttcatgagttgttcaagatcaaacccataattaaatccacaaaattcaaattacaataaagcataatctacaagtaatttga |
253 |
Q |
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| T |
35702767 |
aattttggaactttatctttcatgagttgttcaagatcaaacccataatgaaatccacaaaactcaaattacaataaagcataatctacaagtaatttga |
35702668 |
T |
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| Q |
254 |
ttagggttcataatgctgatacgacggcgtt |
284 |
Q |
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| T |
35702667 |
ttagggttcataatgctgatacgacggcgtt |
35702637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 35702639 - 35702586
Alignment:
| Q |
323 |
gttgggtctgtaagaacaccattcaaccaccccagacagcgtgtgtctgagaac |
376 |
Q |
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| T |
35702639 |
gttgagtctgtaagaacaccatgcaaccaccccagacagcgtgtgtctgagaac |
35702586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 35702897 - 35702824
Alignment:
| Q |
11 |
cacagactgttaacataaaaaataacatnnnnnnntagtgtaataacctcaaaacagattattactgctaagac |
84 |
Q |
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| T |
35702897 |
cacagactgttaacatgaaaaataacataaaaaaatagcgtaataacctcaaaacagattattactgctaagac |
35702824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 34913782 - 34913843
Alignment:
| Q |
315 |
aaaaaagtgttgggtctgtaagaacaccattcaaccaccccagacagcgtgtgtctgagaac |
376 |
Q |
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| T |
34913782 |
aaaagagtgttgggtctgtaagagcaccgtgcaaccaccccagacaacatgtgtctgagaac |
34913843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 34906546 - 34906482
Alignment:
| Q |
315 |
aaaaaagtgttgggtctgtaagaacaccattcaaccaccccagaca---gcgtgtgtctgagaac |
376 |
Q |
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| T |
34906546 |
aaaagagtgttgggtctgtaagagcaccgtgcaaccaccccagacacatgcatgtgtctgagaac |
34906482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 41108009 - 41108063
Alignment:
| Q |
322 |
tgttgggtctgtaagaacaccattcaaccaccccagacagcgtgtgtctgagaac |
376 |
Q |
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| T |
41108009 |
tgttgagtctgtaagagcaccatgcgaccaccccagacagcgtgtgtctgagaac |
41108063 |
T |
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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 19873 - 19812
Alignment:
| Q |
315 |
aaaaaagtgttgggtctgtaagaacaccattcaaccaccccagacagcgtgtgtctgagaac |
376 |
Q |
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| T |
19873 |
aaaaaagtgttgggtatgtaagagcaccgtgcggccaccccagatagcgtttgtctgagaac |
19812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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