View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18953_high_5 (Length: 279)
Name: NF18953_high_5
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18953_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 27908160 - 27908412
Alignment:
| Q |
10 |
gagatgaagaagaacaacaagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtca |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27908160 |
gagaagaagaagaacaacaagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtca |
27908259 |
T |
|
| Q |
110 |
aggccaagatccaggttagttagggtttcttatgatcgctgattttgttacttttaattttgcttactcgatttattttaagggttttattaaaa-ttcg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27908260 |
aggccaagatccaggttagttagggtttcttatgatcgctgattttgttacttttaattttgcttactcgatttattttaagggttttattaaaatttcg |
27908359 |
T |
|
| Q |
209 |
tgtctgctaggttttacaattgaaattatttgtgaaaattctactgataaaac |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27908360 |
tgtctgctaggttttacaattgaaattatttgtgaaaattctactaataaaac |
27908412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 31306682 - 31306589
Alignment:
| Q |
29 |
agatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatcca |
122 |
Q |
| |
|
||||||||||||| || ||||| ||||| ||||| || |||||||| ||||| |||||| ||| || || || || ||||||||||||||||| |
|
|
| T |
31306682 |
agatgcagatctttgtgaaaacattgacaggaaaaaccatcactcttgaggtagagagttccgatacaattgataatgtcaaggccaagatcca |
31306589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 40493184 - 40493082
Alignment:
| Q |
28 |
aagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccaggtta |
127 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40493184 |
aagatgcagatcttcgtgaagactttgaccggaaagactatcaccctcgaggttgagagcagcgacacaatcgacaacgtcaaggccaagatccaggtta |
40493085 |
T |
|
| Q |
128 |
gtt |
130 |
Q |
| |
|
||| |
|
|
| T |
40493084 |
gtt |
40493082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 33772936 - 33773031
Alignment:
| Q |
29 |
agatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg |
124 |
Q |
| |
|
||||||| |||||||| ||||| | || |||||||| ||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| |
|
|
| T |
33772936 |
agatgcaaatcttcgtgaaaaccctcactggaaagaccatcactctcgaggttgagagttccgacaccatcgacaacgttaaggctaagatccagg |
33773031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 36459855 - 36459952
Alignment:
| Q |
27 |
caagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg |
124 |
Q |
| |
|
|||||||||||||||||| ||||| | || || ||||| || || |||||||||||| | |||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
36459855 |
caagatgcagatcttcgtgaaaaccctaacagggaagacgataaccctcgaggttgagtcttccgacacaatcgacaatgtcaaagccaagatccagg |
36459952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 33775031 - 33775065
Alignment:
| Q |
90 |
cgacaccatcgacaacgtcaaggccaagatccagg |
124 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33775031 |
cgacaccatcgacaacgtcaaagccaagatccagg |
33775065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 42609768 - 42609683
Alignment:
| Q |
31 |
atgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaa |
116 |
Q |
| |
|
|||||||||||||| ||||| | ||||| || || ||||| |||||||||||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
42609768 |
atgcagatcttcgtgaaaaccctaaccgggaaaaccatcaccctcgaggttgagagcagtgacacaatcgacaatgtcaaggccaa |
42609683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 25948399 - 25948487
Alignment:
| Q |
31 |
atgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagat |
119 |
Q |
| |
|
|||||||| ||||| ||||| | || || ||||| || |||||||| || |||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
25948399 |
atgcagatattcgtgaaaaccctaacagggaagacaattactctcgaagtcgagagtagtgacaccatcgacaatgtcaaagccaagat |
25948487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 42075576 - 42075669
Alignment:
| Q |
31 |
atgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg |
124 |
Q |
| |
|
|||||||||||||| ||||| | ||||| ||||||||||| || ||||| ||| |||||||| ||||| |||||||| || ||||| |||| |
|
|
| T |
42075576 |
atgcagatcttcgtgaaaaccctaaccggcaagactatcacccttgaggtggagtcaagcgacactatcgataacgtcaaagctaagattcagg |
42075669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University