View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18953_low_1 (Length: 944)
Name: NF18953_low_1
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18953_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 660; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 241 - 932
Target Start/End: Complemental strand, 38440978 - 38440287
Alignment:
| Q |
241 |
tttggcgaccctttatcctcctttgtcaaattcattattttctaccccactttcttatcatccataactgcgccccaaaatgaattatcaacaaagtgaa |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38440978 |
tttggcgaccctttatcctcctttgtcaaattctttattttctaccccactttcttatcatccataactgcgccccaaaatgaattatcaacaaagtgaa |
38440879 |
T |
|
| Q |
341 |
tgttcagaaccatttggtgtgaaacatcaaacaatacaatgcaaaatgaaaagttaaaaccattccaaattccaaaaacagtacttcaacgttaaaaaca |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38440878 |
tgttcagaaccatttggtgtgaaacatcaaacaataaaatgcaaaatgaaaagttaaaaccattccaaattccgaaaacagtacttcaatgttaaaaaca |
38440779 |
T |
|
| Q |
441 |
atatatgtggtcttctaagatgaaaacaatcttgaaaacaagtaaccatgacaaccttgcacagtatctagaagaggcatagtttgacatgcttcctcaa |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38440778 |
atatatgtggtcttctaagatgaaaacaatcttgaaaacaagtaaccatgacaaccttgcacagtatctagaagaggcatagtttgacatgcttcctcaa |
38440679 |
T |
|
| Q |
541 |
catcacgattcatccatttttctaatataatttcagcaataggagcaacttgatgctgcaacaatgctgcaccaaggggtcctatcaagttcaaccttgt |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38440678 |
catcacgattcatccatttttctaatataacttcagcaataggagcaacttgatgttgcaacaatgctgcaccaaggggtcctatcaagttcaaccttgt |
38440579 |
T |
|
| Q |
641 |
agcagcagataccacatctctcattgttatgaacatgaaagctctctgagaacttgtactatcgaaccctaacgcaccacatgttagtccaaatatagga |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38440578 |
agcagcagataccacatctctcattgttatgaacatgaaagctctctgagaacttgtactatcgaaccccaacgcaccacatgttagtccaaatatagga |
38440479 |
T |
|
| Q |
741 |
gcgtgatgaaaagatacagtccctaacttcagagaagaatctctcattgttttgagagaaggaatctccgcaaacacagctgaagctaccctcattaatg |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38440478 |
gcgtgatgaaaagatacagtccctaacttcatagaagaatctctcattgttttgagagaaggaatctccgcaaacacagctgaagctaccctcattaatg |
38440379 |
T |
|
| Q |
841 |
cagatccttgtgagattgatgcctttcgacccacttcattagtaagggtagcatccaatatcctgtcaagtttatgccaggtttccatattc |
932 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38440378 |
cagatccttgtgagattgatgcctttcgacccacttcattagtaagggtagcatccaatatcctgtcaagtttatgccaggtttccatattc |
38440287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 419 - 652
Target Start/End: Complemental strand, 38449187 - 38448956
Alignment:
| Q |
419 |
cagtacttcaacgttaaaaacaatatatgtggtcttctaagatgaaaacaatcttgaaaacaagtaaccatgacaaccttgcacagtatctagaagaggc |
518 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
38449187 |
cagtaattcaacgttaaaaacattaaatgtggtcttctaagatgaaaacagtcttgaaaacaagtaaccatggcaac-ttgcacagtgtctagaagaggc |
38449089 |
T |
|
| Q |
519 |
atagtttgacatgcttcctcaacatcacgattcatccatttttctaatataatttcagcaataggagcaacttgatgctgcaacaatgctgcaccaaggg |
618 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
38449088 |
atagtttgacatgcttcctcaacatctcgattcatccatttttctaatataacttcagcaataggagcaacttgatattgcaacaatgctgcaccaa-ag |
38448990 |
T |
|
| Q |
619 |
gtcctatcaagttcaaccttgtagcagcagatac |
652 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |
|
|
| T |
38448989 |
gtcctatcaagttcaaccttttagtagcagatac |
38448956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 38441297 - 38441067
Alignment:
| Q |
17 |
agcaggatgtcatgttaagaagaaagatatggtactaaacagagtgttcaataaattgaaaatgagagtttctactttctagttatgaaaattacatttt |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38441297 |
agcaagatgtcatgttaagaagaaagatatggtactaaagaaagtgttcaataaattgaaaatgagagtttctattttctagttatgaaaattacatttt |
38441198 |
T |
|
| Q |
117 |
ttattgcatcatgtgaatcaatcaaccgaaccaaatcaaaccagatatcattg---------------gttctacttttataaaatgatgaaaacaaaag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
38441197 |
ttattgcatcatgtgaatcaatcaaccgaaccaaatcaaaccagatatcattggttcagtttagtttggttctacttttaaaaaatgatgaaaacaaaag |
38441098 |
T |
|
| Q |
202 |
caaaccgaactgatgtagattttgtcggttt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38441097 |
caaaccgaactgatgtagattttgtcggttt |
38441067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 38449689 - 38449543
Alignment:
| Q |
27 |
catgttaagaagaaagatatggtactaaacagagtgttcaataaattgaaaatgagagtttctactttctagttatgaaaattacatt--ttttattgca |
124 |
Q |
| |
|
|||||||||||| ||||| ||||||| | |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38449689 |
catgttaagaaggcagatagggtactata-agagtgttgaatgaattgaaaatgagagtttctactttctaactatgaaaattacattttttttattgca |
38449591 |
T |
|
| Q |
125 |
tcatgtgaatcaatcaaccgaaccaaatcaaaccagatatcattggtt |
172 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||| |||||||||||| |
|
|
| T |
38449590 |
tcatgtgaatcaaccaatcagaccaaatcaaaccatatatcattggtt |
38449543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 26031340 - 26031439
Alignment:
| Q |
17 |
agcaggatgtcatgttaagaagaaagatatggtactaaacagagtgttcaataaattgaaaatgagagtttctactttctagttatgaaaattacatttt |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||| |||||||| || || ||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26031340 |
agcaggatgtcatgttaagaaggcagataggttactaacgagagtgttgaagaa-ttgaaaatgcgagtttctactttctagttttgaaaattacatttt |
26031438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 752 - 801
Target Start/End: Complemental strand, 38448961 - 38448912
Alignment:
| Q |
752 |
agatacagtccctaacttcagagaagaatctctcattgttttgagagaag |
801 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38448961 |
agatactgtccctaacttcagagaagaatctctcattgttttgagagaag |
38448912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 26036159 - 26036233
Alignment:
| Q |
17 |
agcaggatgtcatgttaagaagaaagatatggtactaaacagagtgttcaataaattgaaaatgagagtttctact |
92 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||| |||||||| || |||||||||||| ||||||||||| |
|
|
| T |
26036159 |
agcaggatgccatgttaagaaggcagataaggtactaacgagagtgttgaa-aaattgaaaatgtgagtttctact |
26036233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 38449509 - 38449468
Alignment:
| Q |
191 |
gaaaacaaaagcaaaccgaactgatgtagattttgtcggttt |
232 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
38449509 |
gaaaacaaaagcagactgaactgatggagattttgtcggttt |
38449468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University