View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18953_low_10 (Length: 244)
Name: NF18953_low_10
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18953_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 36108238 - 36108073
Alignment:
| Q |
1 |
attattttattttgaatttattcttaaaaaagtaatctaaatttaaccactagattagttaatgtacatagaatttgtcattctcgttaaacacccaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
36108238 |
attattttattttgaatttattcttaaaaaagtcatataaatttaaccactagattagt------acataaaatttgtcattctcgttaaacacccaagt |
36108145 |
T |
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| Q |
101 |
gcagtcattgtttattggtgactctcaatccttaatttgtaaactctaatagctacttgcttgcttctgcaa |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36108144 |
gcagtcattgtttattggtgactctcaatccttaatttgtaaactctaatagctacttgcttgcttctgcaa |
36108073 |
T |
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