View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18953_low_11 (Length: 232)
Name: NF18953_low_11
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18953_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 36108463 - 36108232
Alignment:
| Q |
1 |
aaattcaataaaatccaagtatttacaaagattacatttagtatggaccaagttatgatggactaaaactgactagaatgttttggaatgtctaaaaaag |
100 |
Q |
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| T |
36108463 |
aaattcaataaaatccaagtatttacaaagattacatttagtatggaccaagttatgatggactaaaactgactagaatgttttggaatgtctaaaaaag |
36108364 |
T |
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| Q |
101 |
gacatcgtttatattacatgtatgagaaagttaggtcattccattttatttccttgagttagatatgtgttttcccctgttaccagttggatccatctnn |
200 |
Q |
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| T |
36108363 |
gaaatggtttatattatatgtatgagaaagttaggtcattccattttatttccttgagttagatatgtgttttcccctgttaccagttggatccatctaa |
36108264 |
T |
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| Q |
201 |
nnnnngaccaattttatctatgtagattattt |
232 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36108263 |
aaaaagaccaattttatctatgtagattattt |
36108232 |
T |
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