View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18953_low_3 (Length: 454)

Name: NF18953_low_3
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18953_low_3
NF18953_low_3
[»] chr2 (6 HSPs)
chr2 (122-454)||(18253124-18253452)
chr2 (235-454)||(18256230-18256444)
chr2 (296-444)||(18246030-18246178)
chr2 (111-166)||(18246303-18246358)
chr2 (111-166)||(18256136-18256191)
chr2 (50-99)||(18246355-18246403)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 122 - 454
Target Start/End: Complemental strand, 18253452 - 18253124
Alignment:
Q  122 gaaaatacaacacatacatttattcatctcatgtcacaaatttcttaacacactccttcaaaacacttgacacaatcagaaacagacacaacgaaatgaa 221  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18253452 gaaaatacaacatgtacgtttattcatctcatgtcacaaatttcttaacacactccttcaaaacacttgacacaaccagaaacagacacaacgaaatgaa 18253353  T
Q  222 atataaataattgaaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcatatatagtttaaccactacctccaagaacactc 321  Q
    | |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  18253352 agataaataattaaaagaaaacccagtaatcctgaagattcctcattctttcatatgaataacatcata----gtttaaccactacctccaagaacactc 18253257  T
Q  322 ttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatctgtaaac 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18253256 ttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatctgtaaac 18253157  T
Q  422 gaggattagcactactaaagctattaaaagtaa 454  Q
    |||||||||||||||||||||||||||||||||    
T  18253156 gaggattagcactactaaagctattaaaagtaa 18253124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 235 - 454
Target Start/End: Original strand, 18256230 - 18256444
Alignment:
Q  235 aaagaaaacccagtaatcctgaagattcctcaatctttcatatgaataacatcatatatagtttaaccactacctccaagaacactcttaagcttcttca 334  Q
    |||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||     ||||||||| ||||||||||| || ||||||||||||||    
T  18256230 aaagaaaagccagtaa-catgaagattcctcactctttcatatgaataacatcataa----tttaaccacgacctccaagaatacccttaagcttcttca 18256324  T
Q  335 ctacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatctgtaaacgaggattagcact 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18256325 ctacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaacaaagcgtaatccaatatctgtaaacgaggattagcact 18256424  T
Q  435 actaaagctattaaaagtaa 454  Q
    ||||||||||||||||||||    
T  18256425 actaaagctattaaaagtaa 18256444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 296 - 444
Target Start/End: Complemental strand, 18246178 - 18246030
Alignment:
Q  296 tttaaccactacctccaagaacactcttaagcttcttcactacagcaggatcaataaaagtagttgcagtaatcaacttcgttggaaaatcgctttcaaa 395  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||    
T  18246178 tttaaccactacctccaagaacacccttaagcttcttcactacagcagcatcaataaaagtagttgcagtaatcaactccgttggaaaatcacttttaaa 18246079  T
Q  396 caaagcgtaatccaatatctgtaaacgaggattagcactactaaagcta 444  Q
    ||||||  |||||||||||||||||| ||| ||||||||||||||||||    
T  18246078 caaagcaaaatccaatatctgtaaaccagggttagcactactaaagcta 18246030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 18246358 - 18246303
Alignment:
Q  111 caaatattcaagaaaatacaacacatacatttattcatctcatgtcacaaatttct 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18246358 caaatattcaagaaaatacaacacatacatttattcatctcatgtcacaaatttct 18246303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 18256136 - 18256191
Alignment:
Q  111 caaatattcaagaaaatacaacacatacatttattcatctcatgtcacaaatttct 166  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18256136 caaatattcaagaaaataaaacacatacatttattcatctcatgtcacaaatttct 18256191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 18246403 - 18246355
Alignment:
Q  50 ttttatccattaagtaaactgtgtttgccagtgcaagcaaagtgcacaaa 99  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  18246403 ttttatccattaagtaaactgagtttggcagtgcaagc-aagtgcacaaa 18246355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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