View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18953_low_5 (Length: 390)
Name: NF18953_low_5
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18953_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 49462183 - 49462547
Alignment:
| Q |
1 |
ttggattaaatcggttaaagttagtgaaactgtgggtcttgctgcctcaagacatatgcctagagcagcagtggtataaatataatatagcatattggta |
100 |
Q |
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| T |
49462183 |
ttggattaaatcggttaaagttagtgaaactgcgggtcttgctgcctcaagacat--gcctagagcagcagtggtataa------tatagcatattggta |
49462274 |
T |
|
| Q |
101 |
ttgctcactggccaatcttggtggcttatttcctggtcctgctattgagtttagcttttgccttcaagcttcttcgtaggattgttatacttcttcgtgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49462275 |
ttgctcactggccaatcttggtggcttatttcctggtcctgctattgagtttagcttttgccttcaagcttcttcgtaggattgttatact-cttcgtgg |
49462373 |
T |
|
| Q |
201 |
gactcttgaatggtatttgttgttacctgcttgattttgtttttgacatttatttcaagaataaataaattaggcattacattacctcaagactgctaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49462374 |
gactcttgaatggtatttgttgttacctgcttgattttgtttttgacatttatttcaagaataaataaattaggcattacattatctcaagactgctaca |
49462473 |
T |
|
| Q |
301 |
agtcccttgcattgctctataagtcctttgcattatctcatacacatactttctcaaaggcagtatgaattaag |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49462474 |
agtcccttgcattgctctataagtcctttgcattatctcatacacatactttctcaaaggcagtatgaattaag |
49462547 |
T |
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