View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18953_low_7 (Length: 272)

Name: NF18953_low_7
Description: NF18953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18953_low_7
NF18953_low_7
[»] chr4 (2 HSPs)
chr4 (11-256)||(21205362-21205605)
chr4 (11-256)||(27270855-27271098)
[»] chr6 (2 HSPs)
chr6 (150-197)||(7421373-7421420)
chr6 (168-203)||(13732159-13732194)
[»] chr2 (4 HSPs)
chr2 (163-204)||(20503557-20503598)
chr2 (221-256)||(26604761-26604796)
chr2 (151-204)||(26604655-26604708)
chr2 (154-203)||(27764643-27764692)
[»] chr3 (5 HSPs)
chr3 (154-202)||(6119857-6119905)
chr3 (152-200)||(31279829-31279877)
chr3 (160-202)||(6068608-6068650)
chr3 (154-202)||(797784-797832)
chr3 (154-202)||(6080670-6080718)
[»] chr7 (2 HSPs)
chr7 (152-206)||(19378978-19379032)
chr7 (154-199)||(15985784-15985829)
[»] chr1 (1 HSPs)
chr1 (152-202)||(17356674-17356724)
[»] chr5 (1 HSPs)
chr5 (150-199)||(32392567-32392616)
[»] chr8 (1 HSPs)
chr8 (160-200)||(11860804-11860844)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 21205605 - 21205362
Alignment:
Q  11 agaatataaatgttaataatagaaataaaactttgtgtataagataaaagnnnnnnnnnnttgaaagaaagaaaatagagagtattaacttaccgcgatt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||| ||||||||||||||||||||||||    
T  21205605 agaaaataaatgttaataatagaaataaaactttgtgtataagataaaagaaaaaaaa--ttgaaagaaagaaaacagagagtattaacttaccgcgatt 21205508  T
Q  111 tctgtcaaaaacaaacttaccacctttgatttcagtgatgaaaagaaaaataatcataatataaacaaatttgagaatttcagccatatttttccttatt 210  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21205507 tctgtcaaaaacaaacttaccgcctttgatttcagtgatgaaaagaaaaataatcataatataaacaaatttgagaatttcagccatatttttccttatt 21205408  T
Q  211 cccatgtaacaatagaaaattgtacgatcatttataatgtcaaaat 256  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  21205407 cccatataacaatagaaaattgtacgatcatttataatgtcaaaat 21205362  T

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Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 27271098 - 27270855
Alignment:
Q  11 agaatataaatgttaataatagaaataaaactttgtgtataagataaaagnnnnnnnnnnttgaaagaaagaaaatagagagtattaacttaccgcgatt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||| ||| |||||||| ||||||| |||    
T  27271098 agaaaataaatgttaataatagaaataaaactttgtgtataagataaaagaaaaaaaa--ttgaaagaaagaaaacagaaagtattaatttaccgccatt 27271001  T
Q  111 tctgtcaaaaacaaacttaccacctttgatttcagtgatgaaaagaaaaataatcataatataaacaaatttgagaatttcagccatatttttccttatt 210  Q
    | ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  27271000 tttgtcaaaaacaaacttatcgcctttgatttcagtgatgaaaagaaaaataattataatataaacaaacttgagaatttcagccatatttttccttatt 27270901  T
Q  211 cccatgtaacaatagaaaattgtacgatcatttataatgtcaaaat 256  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  27270900 cctatgtaacaatagaaaattgtacgatcatttataatgtcaaaat 27270855  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 7421373 - 7421420
Alignment:
Q  150 gaaaagaaaaataatcataatataaacaaatttgagaatttcagccat 197  Q
    ||||||||| || ||||||||||||||||||||||||||| |||||||    
T  7421373 gaaaagaaatatgatcataatataaacaaatttgagaattacagccat 7421420  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 13732194 - 13732159
Alignment:
Q  168 aatataaacaaatttgagaatttcagccatattttt 203  Q
    |||||||||||||||||||||||||||||| |||||    
T  13732194 aatataaacaaatttgagaatttcagccattttttt 13732159  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 20503598 - 20503557
Alignment:
Q  163 atcataatataaacaaatttgagaatttcagccatatttttc 204  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  20503598 atcataatataaacaaatttgagaattttagccatttttttc 20503557  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 26604761 - 26604796
Alignment:
Q  221 aatagaaaattgtacgatcatttataatgtcaaaat 256  Q
    |||||||||||||| |||||||||||||||||||||    
T  26604761 aatagaaaattgtatgatcatttataatgtcaaaat 26604796  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 26604655 - 26604708
Alignment:
Q  151 aaaagaaaaataatcataatataaacaaatttgagaatttcagccatatttttc 204  Q
    |||||| ||| |||||||||| ||| ||| ||| ||||||||||||||||||||    
T  26604655 aaaagacaaaaaatcataatagaaataaaattgtgaatttcagccatatttttc 26604708  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 27764643 - 27764692
Alignment:
Q  154 agaaaaataatcataatataaacaaatttgagaatttcagccatattttt 203  Q
    ||||||||||||||||||| || ||| |||||||||| | ||||||||||    
T  27764643 agaaaaataatcataatatgaataaacttgagaattttaaccatattttt 27764692  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 6119905 - 6119857
Alignment:
Q  154 agaaaaataatcataatataaacaaatttgagaatttcagccatatttt 202  Q
    ||||| |||||||||| | ||||||| ||||||||||||||||||||||    
T  6119905 agaaatataatcataaaacaaacaaacttgagaatttcagccatatttt 6119857  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 31279877 - 31279829
Alignment:
Q  152 aaagaaaaataatcataatataaacaaatttgagaatttcagccatatt 200  Q
    ||||||| |||||||||| ||||||||| |||| |||||||||||||||    
T  31279877 aaagaaagataatcataagataaacaaacttgacaatttcagccatatt 31279829  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 6068650 - 6068608
Alignment:
Q  160 ataatcataatataaacaaatttgagaatttcagccatatttt 202  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||    
T  6068650 ataatcataatacaaacaaacttgagaatttcagtcatatttt 6068608  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 797832 - 797784
Alignment:
Q  154 agaaaaataatcataatataaacaaatttgagaatttcagccatatttt 202  Q
    ||||||||||||||| |||||||| | |||| ||||| |||||||||||    
T  797832 agaaaaataatcatactataaacataattgacaattttagccatatttt 797784  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 6080670 - 6080718
Alignment:
Q  154 agaaaaataatcataatataaacaaatttgagaatttcagccatatttt 202  Q
    ||||| |||||||||| | ||||||| ||||||||||||| ||||||||    
T  6080670 agaaatataatcataacacaaacaaacttgagaatttcagtcatatttt 6080718  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 19378978 - 19379032
Alignment:
Q  152 aaagaaaaataatcataatataaacaaatttgagaatttcagccatatttttcct 206  Q
    ||||||| | ||||||||||||||||||||| ||| ||| | |||||||||||||    
T  19378978 aaagaaatagaatcataatataaacaaattttagagttttatccatatttttcct 19379032  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 15985784 - 15985829
Alignment:
Q  154 agaaaaataatcataatataaacaaatttgagaatttcagccatat 199  Q
    ||||| |||||||||| |||||| ||||||| ||||||||||||||    
T  15985784 agaaagataatcataacataaacgaatttgacaatttcagccatat 15985829  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 17356674 - 17356724
Alignment:
Q  152 aaagaaaaataatcataatataaacaaatttgagaatttcagccatatttt 202  Q
    |||| ||||||||||||| || ||||||||||| |||||||| ||||||||    
T  17356674 aaagcaaaataatcataagattaacaaatttgacaatttcagtcatatttt 17356724  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 32392616 - 32392567
Alignment:
Q  150 gaaaagaaaaataatcataatataaacaaatttgagaatttcagccatat 199  Q
    ||||||||| | |||||||| |||||||||||||| |||||| |||||||    
T  32392616 gaaaagaaataaaatcataacataaacaaatttgataatttctgccatat 32392567  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 11860844 - 11860804
Alignment:
Q  160 ataatcataatataaacaaatttgagaatttcagccatatt 200  Q
    |||||||||| ||||||||| |||| |||||||||||||||    
T  11860844 ataatcataacataaacaaacttgacaatttcagccatatt 11860804  T

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