View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18954_low_1 (Length: 316)
Name: NF18954_low_1
Description: NF18954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18954_low_1 |
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| [»] scaffold0557 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 271
Target Start/End: Complemental strand, 7974142 - 7973922
Alignment:
| Q |
45 |
ttcattgttcatttccaaaaccctagttctaccgcaccgctgcaacaacgtcaatcatcaaccgcaccccggcaattcactgccattacatcgcccgtgc |
144 |
Q |
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| T |
7974142 |
ttcattgttcatttccaaaaccgtagttctgctgcactgctgccacaatggcaatcatcaaccgcac----gcaattcacc-ccgttacatcgcccgtgc |
7974048 |
T |
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| Q |
145 |
agtatcatcgccacaataatctcatatttcagatcgctttctttcttatcgttcagttcccaaacccttatcacaatcatctcatcatcccatctaccaa |
244 |
Q |
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| T |
7974047 |
agtatcaccgccattatcatctcaaatttcagatggctttctttgacatcgttcaattccaaaacccttatcaccgttatctcatcat-ccatctaccaa |
7973949 |
T |
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| Q |
245 |
ccctttcatttccactgctgttcttcc |
271 |
Q |
| |
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|||||| | |||||||||| ||||||| |
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| T |
7973948 |
cccttttagttccactgctcttcttcc |
7973922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7963357 - 7963324
Alignment:
| Q |
1 |
gaagagtcattcatctctatttcaaattaaagta |
34 |
Q |
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| T |
7963357 |
gaagagtcattcatctctatttcaaattaaagta |
7963324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 304
Target Start/End: Original strand, 47288493 - 47288705
Alignment:
| Q |
97 |
aatcatcaaccgcaccccggcaattcactgccattacatcgcccgtgcagtatcatcgccacaataatctcatatttcagatcgctttctttcttatcgt |
196 |
Q |
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| T |
47288493 |
aatcatcaacagcaccgccgcaattcactaccattacattccccgtgcagtatcacagccactatcatctcatattacagattgttttctttctcatcgt |
47288592 |
T |
|
| Q |
197 |
tcagttcccaaaccct-----tatcacaatcatctcatcatcccatctaccaaccctttcatttccactgctgttcttcccttccctcgagtcacgatta |
291 |
Q |
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| T |
47288593 |
tccgttcccaaaccctcatcagatcaccatcatctcataatcccacctaccaacccttccagttcaactgctattcttccttttcctccagtcctgatta |
47288692 |
T |
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| Q |
292 |
tcctaagggtgac |
304 |
Q |
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||| | ||||||| |
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| T |
47288693 |
tcccacgggtgac |
47288705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19110549 - 19110516
Alignment:
| Q |
1 |
gaagagtcattcatctctatttcaaattaaagta |
34 |
Q |
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| T |
19110549 |
gaagagtcattcatctctatttcaaattaaagta |
19110516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 304
Target Start/End: Original strand, 47292004 - 47292215
Alignment:
| Q |
98 |
atcatcaaccgcaccccggcaattcactgccattacatcgcccgtgcagtatcatcgccacaataatctcatatttcagatcgctttctttcttatcgt- |
196 |
Q |
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||||||||||||||| | ||||||||| ||| |||||| |||| |||| |||| ||||| || |||| |||| | ||| ||||||| ||| ||||| |
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| T |
47292004 |
atcatcaaccgcaccgccgcaattcaccgccgttacatttcccgcacagtttcattgccactatcatcttctattaccgatggctttctctctcatcgtc |
47292103 |
T |
|
| Q |
197 |
tcagttcccaaacccttat------cacaatcatctcatcatcccatctaccaaccctttcatttccactgctgttcttcccttccctcgagtcacgatt |
290 |
Q |
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||| ||||||||||||||| ||| ||||||||||||||||||| || || |||| || |||||| | | ||||| ||| |||||||| | |||| |
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| T |
47292104 |
tca-ttcccaaacccttatcaccaccaccatcatctcatcatcccatccacaaagccttccagttccaccgttcttctt-cctaccctcgagccctgatt |
47292201 |
T |
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| Q |
291 |
atcctaagggtgac |
304 |
Q |
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| T |
47292202 |
atccaacgggtgac |
47292215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 8047 - 8080
Alignment:
| Q |
2 |
aagagtcattcatctctatttcaaattaaagtaa |
35 |
Q |
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| T |
8047 |
aagagtcattcatctctatttcaaattaaagtaa |
8080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14465047 - 14465080
Alignment:
| Q |
1 |
gaagagtcattcatctctatttcaaattaaagta |
34 |
Q |
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| T |
14465047 |
gaagagtcattcatctctatttcaaattaaagta |
14465080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18716878 - 18716911
Alignment:
| Q |
1 |
gaagagtcattcatctctatttcaaattaaagta |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
18716878 |
gaagagtcattcatctctatttcaaattaaagta |
18716911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29467190 - 29467157
Alignment:
| Q |
1 |
gaagagtcattcatctctatttcaaattaaagta |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29467190 |
gaagagtcattcatctctatttcaaattaaagta |
29467157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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