View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18954_low_3 (Length: 214)
Name: NF18954_low_3
Description: NF18954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18954_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 52590259 - 52590088
Alignment:
| Q |
19 |
agactatcatttcacagattcaggaaagcaacaacacatgtttggcaatactcatctgttgcatgaatttgtcgtatgaaaatctaccaaagatannnnn |
118 |
Q |
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| T |
52590259 |
agactatcatttcacagattcaggaaagcaacaacacatgtttggcaatactcatctgttgcatgaatttgtcgtatgaaaatctaccaaagata-tttt |
52590161 |
T |
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| Q |
119 |
nnnnnnnnnactaaaggtatcttatctctgaaaggtgtacttcctcaaaccatatgctgttgttttttaattc |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52590160 |
tcattttttactaaaggtatcttatctctgaaaggtgtacttcctcaaaccatatgctgttgttttttaattc |
52590088 |
T |
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