View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18955_high_16 (Length: 232)
Name: NF18955_high_16
Description: NF18955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18955_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 44063471 - 44063271
Alignment:
| Q |
17 |
aaaataaatccagtactgagaatgggcattgggaggaaattggtgtgacagtaccaatattttcaggcactgaccagaaagtgggaatgaagaagtacct |
116 |
Q |
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| T |
44063471 |
aaaataaatccagtactgagaatgggcattgggaggaaattggtgtgacagtaccaatattttcaggcactgaccagaaagtgggaatgaagaagtacct |
44063372 |
T |
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| Q |
117 |
attattccacattggcgaattagcacaaagttctgaaacaagttgggtaatgcaagaatatcatatttgctccactggatttgatcaaagtactgtttca |
216 |
Q |
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| T |
44063371 |
attattccacattggcgaattagcacaaagttttgaaacaagttgggtaatgcaagaatatcatatttgctccactggatttgatcaaagtactgtttca |
44063272 |
T |
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| Q |
217 |
t |
217 |
Q |
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| T |
44063271 |
t |
44063271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 39241746 - 39241712
Alignment:
| Q |
150 |
tgaaacaagttgggtaatgcaagaatatcatattt |
184 |
Q |
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| T |
39241746 |
tgaaacaagttgggtaatggaagaatatcatattt |
39241712 |
T |
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