View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18955_high_2 (Length: 817)
Name: NF18955_high_2
Description: NF18955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18955_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 99 - 817
Target Start/End: Original strand, 28035142 - 28035861
Alignment:
| Q |
99 |
agtatatattaaatcaatggaatcctctggtacctcttgattgataaagttccaacctacttttggcttctggtaaaattgcttgaannnnnnnn-ctgc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
28035142 |
agtatatattaaatcaatggaatcctctggtacctcttgattgataaagttccaacctacttttggcttctggtaaaattgcttcaatttttttttctgc |
28035241 |
T |
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| Q |
198 |
cattatatgtgtttgctttgtgcaccactcaagtactattaacacctcctcttgtccaagagtctcatttttaggaacatgtagcgcaacgaaacacaaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28035242 |
cattatatgtgtttgctttgtgcaccactcaagtactattaacacctcctcttgtccaagagtctcatttttaggaacatgtagcgcaacgaaacacaaa |
28035341 |
T |
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| Q |
298 |
agaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagttgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtct |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28035342 |
agaagcaacgaaggaatttgcaccatttgttccccaaagtaaactagttgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtct |
28035441 |
T |
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| Q |
398 |
catgtagatagttatcagtctcagcaaatttgatgagagcttttgatgcttccgtagaaatcaccggttctgtttcatcgagcaacttcaccaatagcgc |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28035442 |
catgtagatagttatcagtctcagcaaatttgatgagagcttttgatgcttccgtagaaatcaccggttctgtttcatcgagcaacttcaccaatggcgc |
28035541 |
T |
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| Q |
498 |
aatgaatcttgtttcagttgctctaaaagtcctcgctaagttaccaatagctttaacacaaggtatgagcaaatcctcggagtcacctttttcgacaact |
597 |
Q |
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| T |
28035542 |
aatgaatcttgtttcagttgctctaaaagtccttgctaagttaccaatagctttaacacaaggtatgagcaaatcctcggagtcacctttttcaacaact |
28035641 |
T |
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| Q |
598 |
ttgagaaactgttccaccacagcttttgcagcaggggcagttggtttgaaagcagagcgtctcaattctgcatgttctgctgccacagatgttatttcca |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28035642 |
ttgagaaactgttccaccacagcttttgcagcaggggcagttggtttgaaagcagaacgtctcaattctgcatgttctgctgccacagatgttatttcca |
28035741 |
T |
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| Q |
698 |
tcaaagccattgctgaataatgttgcacatcatctgtacccttttccaacaaaaccgcgaaacacaaaagagctcttgattctgtaattgtatgacaaat |
797 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28035742 |
tcaaagccattgctgaataatgttgcacatcatcagtacccttttccaacaaaaccgcaaaacacaaaagagctcttgattctgtaattgtatgacaaat |
28035841 |
T |
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| Q |
798 |
agtaacatttcttctacaca |
817 |
Q |
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|||||||||||||||||||| |
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| T |
28035842 |
agtaacatttcttctacaca |
28035861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 8758077 - 8758023
Alignment:
| Q |
115 |
atggaatcctctggtacctcttgattgataaagttccaacctacttttggcttct |
169 |
Q |
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|||||||||||| | |||||| || |||||||| ||||||||||| ||||||||| |
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| T |
8758077 |
atggaatcctcttgaacctctagactgataaagctccaacctactcttggcttct |
8758023 |
T |
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