View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18955_high_3 (Length: 642)
Name: NF18955_high_3
Description: NF18955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18955_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 19 - 632
Target Start/End: Complemental strand, 46785837 - 46785224
Alignment:
| Q |
19 |
gaaagagcacctcatgctttcacatttgtctcttcaactggaacagcacgtgcgtcttctcaaggttaatttgttttatctgttgttcccttcattttga |
118 |
Q |
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| T |
46785837 |
gaaagagcacctcatgctttcacatttgtctcttcaactggaacagcacgtgcgtcttctcaaggttaatttgttttatctgttgttcccttcattttga |
46785738 |
T |
|
| Q |
119 |
gaaattcattaattaagaatgacatactgtactagataacttcgcttgttttagaagagtgcatgcactctgcaaatgacattcttttaatgatttattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46785737 |
gaaattcattaattaagaatgacatactgtactagataacttcgcttgttttagaagagtgcatgcactctgcaaatgacattcttttaatgatttattt |
46785638 |
T |
|
| Q |
219 |
atgagtactgctatcttcaacaactgtttataggtcatggggaagactaccaagttcagtgtgctgttggacaatgcccgagaagttgcattcattatgt |
318 |
Q |
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| T |
46785637 |
atgagtactgctatcttcaacaactgtttataggtcatggggaagactaccaagttcagtgcgctgttggacaatgcccgagaagttgcattcattatgt |
46785538 |
T |
|
| Q |
319 |
aaccccatcacagagaattattttggaggaattacttaacaggtaacattaacagcgttactcatcctacaaannnnnnnnacctggtggggtgtggaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46785537 |
aaccccatcacagagaattattttggaggaattacttaacaggtaacattaacagcgttactcatcctacaatttttttttacctggtggggtgtggaat |
46785438 |
T |
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| Q |
419 |
agtttatcaaattaatccctttgtcaacttattatctttcttataaaactaaaagatgcaatacaatcatatactagcatgcttttttacttaatcatat |
518 |
Q |
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| T |
46785437 |
agtttatcaaattaatccctttgtcaacttattatctttcttataaaactaaaagatgcaatacaatcatatactagcatgcttttttacttaatcatat |
46785338 |
T |
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| Q |
519 |
aacatattattaccttttggaatcatacaatgtttttagagtttaataagttcattccatttgatttcttatttcctttttgttgatgttgcagtataat |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46785337 |
aacatattattaccttttggaatcatacaatgtttttagagtttaataagttcattccatttgatttcttatttccttcttgttgatgttgcagtataat |
46785238 |
T |
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| Q |
619 |
agatgcaccctatg |
632 |
Q |
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|||||||||||||| |
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| T |
46785237 |
agatgcaccctatg |
46785224 |
T |
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