View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18955_high_4 (Length: 440)

Name: NF18955_high_4
Description: NF18955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18955_high_4
NF18955_high_4
[»] chr8 (20 HSPs)
chr8 (1-436)||(14628691-14629117)
chr8 (126-440)||(14636597-14636910)
chr8 (125-332)||(15175214-15175426)
chr8 (125-323)||(26600807-26601009)
chr8 (189-323)||(11175356-11175493)
chr8 (187-338)||(43120720-43120875)
chr8 (159-332)||(26916226-26916402)
chr8 (129-315)||(35170742-35170932)
chr8 (149-258)||(32350797-32350906)
chr8 (149-258)||(32367458-32367567)
chr8 (187-341)||(4187298-4187456)
chr8 (203-310)||(10839653-10839763)
chr8 (182-332)||(31447176-31447329)
chr8 (240-332)||(40112659-40112753)
chr8 (249-315)||(4606251-4606317)
chr8 (197-347)||(12076462-12076617)
chr8 (254-331)||(37295047-37295124)
chr8 (203-314)||(1823439-1823551)
chr8 (203-314)||(1857884-1857996)
chr8 (276-318)||(28452052-28452094)
[»] chr1 (24 HSPs)
chr1 (125-317)||(15183795-15183992)
chr1 (159-323)||(31165624-31165792)
chr1 (123-332)||(31065112-31065326)
chr1 (223-341)||(4080388-4080506)
chr1 (219-332)||(27458308-27458425)
chr1 (125-324)||(35307166-35307369)
chr1 (223-332)||(26801277-26801387)
chr1 (268-324)||(51062176-51062232)
chr1 (149-307)||(14578424-14578586)
chr1 (187-329)||(2765555-2765696)
chr1 (232-318)||(30440623-30440709)
chr1 (268-341)||(32893739-32893812)
chr1 (187-323)||(48496985-48497124)
chr1 (289-348)||(37126535-37126594)
chr1 (210-305)||(23532831-23532929)
chr1 (191-348)||(42241979-42242132)
chr1 (251-318)||(15939204-15939271)
chr1 (268-338)||(4408310-4408380)
chr1 (276-318)||(52650894-52650936)
chr1 (231-299)||(28226692-28226763)
chr1 (269-314)||(39789593-39789638)
chr1 (287-324)||(42669027-42669064)
chr1 (276-332)||(12512409-12512465)
chr1 (276-304)||(24754961-24754989)
[»] chr3 (13 HSPs)
chr3 (129-332)||(16194243-16194451)
chr3 (203-332)||(8795703-8795836)
chr3 (177-332)||(36260806-36260960)
chr3 (159-332)||(29306170-29306347)
chr3 (176-348)||(33282669-33282843)
chr3 (219-316)||(43369820-43369920)
chr3 (250-323)||(29491012-29491085)
chr3 (207-332)||(18680782-18680911)
chr3 (280-340)||(30537505-30537565)
chr3 (276-315)||(15863544-15863583)
chr3 (268-318)||(44108118-44108168)
chr3 (187-243)||(2757277-2757333)
chr3 (276-332)||(17549763-17549819)
[»] chr2 (23 HSPs)
chr2 (129-324)||(5187918-5188118)
chr2 (207-323)||(9298778-9298898)
chr2 (151-347)||(1130741-1130938)
chr2 (129-332)||(10221474-10221682)
chr2 (231-348)||(45707211-45707331)
chr2 (174-315)||(83562-83706)
chr2 (187-263)||(7818214-7818288)
chr2 (271-332)||(9158759-9158820)
chr2 (163-315)||(18704737-18704892)
chr2 (235-332)||(41437434-41437531)
chr2 (177-317)||(43080896-43081036)
chr2 (187-323)||(33428792-33428930)
chr2 (206-323)||(37817596-37817717)
chr2 (220-323)||(21437064-21437168)
chr2 (243-341)||(14201516-14201615)
chr2 (280-341)||(11862328-11862389)
chr2 (287-339)||(17200700-17200752)
chr2 (187-318)||(36472376-36472509)
chr2 (250-309)||(43229274-43229333)
chr2 (287-324)||(7401150-7401187)
chr2 (197-238)||(35341883-35341924)
chr2 (187-315)||(41959698-41959829)
chr2 (277-341)||(35494079-35494143)
[»] chr6 (6 HSPs)
chr6 (129-324)||(11751764-11751963)
chr6 (210-332)||(2391390-2391515)
chr6 (275-324)||(35029931-35029980)
chr6 (240-316)||(2760707-2760783)
chr6 (268-332)||(10479672-10479736)
chr6 (188-292)||(23888215-23888319)
[»] chr5 (10 HSPs)
chr5 (203-317)||(33401530-33401645)
chr5 (192-315)||(859832-859955)
chr5 (248-318)||(932645-932714)
chr5 (177-341)||(36267937-36268101)
chr5 (150-302)||(5177374-5177529)
chr5 (232-341)||(32424180-32424288)
chr5 (279-323)||(10099611-10099655)
chr5 (276-312)||(12920431-12920467)
chr5 (133-252)||(16600570-16600690)
chr5 (249-341)||(8822403-8822498)
[»] chr4 (21 HSPs)
chr4 (219-346)||(24194919-24195044)
chr4 (125-323)||(867443-867644)
chr4 (151-323)||(56094295-56094471)
chr4 (219-307)||(52646778-52646869)
chr4 (129-323)||(42679167-42679365)
chr4 (251-318)||(18521307-18521374)
chr4 (251-313)||(26003779-26003841)
chr4 (219-323)||(48827642-48827748)
chr4 (268-323)||(600535-600590)
chr4 (175-250)||(25856970-25857045)
chr4 (251-312)||(47312176-47312237)
chr4 (207-332)||(5750744-5750873)
chr4 (187-302)||(26644986-26645104)
chr4 (276-332)||(40549351-40549407)
chr4 (276-341)||(48685765-48685831)
chr4 (276-340)||(14352265-14352329)
chr4 (129-285)||(23441478-23441634)
chr4 (249-312)||(22097185-22097248)
chr4 (245-346)||(24274023-24274125)
chr4 (268-341)||(7555718-7555791)
chr4 (150-258)||(35292871-35292979)
[»] chr7 (17 HSPs)
chr7 (174-323)||(34595915-34596067)
chr7 (275-348)||(38362608-38362681)
chr7 (187-348)||(38582222-38582386)
chr7 (150-347)||(3839264-3839462)
chr7 (276-348)||(46435630-46435702)
chr7 (275-332)||(32450282-32450339)
chr7 (268-315)||(41947019-41947066)
chr7 (125-323)||(47084946-47085149)
chr7 (276-332)||(44594350-44594406)
chr7 (159-315)||(33407137-33407291)
chr7 (278-323)||(43230896-43230941)
chr7 (276-324)||(3371454-3371502)
chr7 (268-332)||(33589314-33589378)
chr7 (280-332)||(38314340-38314392)
chr7 (219-341)||(32438142-32438267)
chr7 (276-318)||(43891453-43891495)
chr7 (296-341)||(9003585-9003630)
[»] scaffold0001 (1 HSPs)
scaffold0001 (149-296)||(508074-508223)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 14628691 - 14629117
Alignment:
Q  1 catggatgggagagtaactcttttcatgctcatgtctaaacgctatacattgcttgtatcaatggtatttgggaggtaataagcagaggcaatatgatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14628691 catggatgggagagtaactcttttcatgctcatgtctaaacgctatacattgcttgtatcaatggtatttgggaggtaataagcagaggcaatatgatgc 14628790  T
Q  101 tcagtagaaggaagacaacggtttatagaatatttacactatcacccacttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14628791 tcagtagaaggaagacaacggtttatagaatatttacactatcacccacttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggt 14628890  T
Q  201 gataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttatatttcaagcttaattttacaaataaatatttcatc 300  Q
    |||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14628891 gataggtccaaaaatgcgtat----------atgattagttacacacattttcttcttgttttatattttaagcttaattttacaaataaatatttcatc 14628980  T
Q  301 aacaatattataaatcaattaattaatcaattctatttcaagtcaaaaaacttataggaacttaaaggacgaatttgt-nnnnnnnnnnccttaaagaac 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  14628981 aacaatattataaatcaattaattaatcaattctatttcaagtcaaaaaacttataggaacttaaaggacgaatttgtaaaaaaaaaaaccttaaagaac 14629080  T
Q  400 taacttgttagaatgatatgaaataaagacacgggtg 436  Q
    |||||||||||||||||||||||||||||||||||||    
T  14629081 taacttgttagaatgatatgaaataaagacacgggtg 14629117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 126 - 440
Target Start/End: Original strand, 14636597 - 14636910
Alignment:
Q  126 tagaatatttacactatcacccacttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgaca 225  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||| ||||||||| |||||||| | |||||||    
T  14636597 tagaatatttacactatcacccacttttcaacaaactttgttcgaatgtgtgtatggaccctttaacattgtggtgataggcccaaaaatacttatgaca 14636696  T
Q  226 tcaagcatgattagttacacacattttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaatta 325  Q
    |||| ||||||||||||||  |||||||||||||||||  | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14636697 tcaaacatgattagttacatgcattttcttcttgtttttgaattcaagcttaattttacaaataaatatttcatcagcaatattataaatcaattaatta 14636796  T
Q  326 atcaattctatttcaagtcaaaaaacttataggaacttaaaggacgaatttgtnnnnnnnnnnccttaaagaactaacttgttagaatgatatgaaataa 425  Q
     ||||||||||||||| |||||||||| | | ||||||||||||| |||||||           |||||| ||||| ||||||||||| |||| ||||||    
T  14636797 gtcaattctatttcaaatcaaaaaactcaaaagaacttaaaggacaaatttgtaacaaaaaaa-cttaaaaaactagcttgttagaatcatataaaataa 14636895  T
Q  426 agacacgggtggaat 440  Q
    |||||| ||||||||    
T  14636896 agacaccggtggaat 14636910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 125 - 332
Target Start/End: Complemental strand, 15175426 - 15175214
Alignment:
Q  125 atagaatatttacactatca-cccacttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatga 223  Q
    |||||||| ||||||||||| ||| ||||||||  ||||| ||  ||| ||| |||| || | ||||| ||| || || ||||||||||||||| |||||    
T  15175426 atagaatacttacactatcatccctcttttcagtcaacttcgtcaaaaagtgcttatagatcatttaatattaagatggtaggtccaaaaatgcttatga 15175327  T
Q  224 catcaagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaat 319  Q
    |||||| |||||||| ||||||||||||||||||| || | |    ||||||| | |||| ||||| |||||||||| |||||||||||||||||||||     
T  15175326 catcaaacatgattacttacacacattttcttcttcttgtttttgaatttcaaacctaatattacatataaatatttgatcaacaatattataaatcaag 15175227  T
Q  320 taattaatcaatt 332  Q
    ||||  |||||||    
T  15175226 taatcgatcaatt 15175214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 323
Target Start/End: Original strand, 26600807 - 26601009
Alignment:
Q  125 atagaatatttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatga 223  Q
    |||||||||||||||| ||| ||| ||||||||| ||||| ||| ||| ||||||||  ||  ||||||||| || || ||||||||||| ||| |||||    
T  26600807 atagaatatttacactgtcatccatcttttcagccaacttcgttaaaaagtgtttataaacaatttaacattaagatggtaggtccaaaagtgcttatga 26600906  T
Q  224 catcaagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaat 319  Q
    |||||| |||||||| ||| ||||||||||||||| || | |    ||||||||| |||||| ||| | |||||||| |||||||||||||||||||||     
T  26600907 catcaaacatgattacttatacacattttcttcttcttgtttttgaatttcaagcctaattt-acatacaaatatttgatcaacaatattataaatcaag 26601005  T
Q  320 taat 323  Q
    ||||    
T  26601006 taat 26601009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 189 - 323
Target Start/End: Original strand, 11175356 - 11175493
Alignment:
Q  189 taacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagtta--cacacattttcttcttgttttata-tttcaagcttaattttaca 285  Q
    ||||||| || |||||||| ||||| ||| ||||||||||| |||||||| |||  |||||||||||||||| ||||  | |||||||| |||||||||     
T  11175356 taacattaagatgataggttcaaaagtgcttatgacatcaaacatgattatttatacacacattttcttcttatttttgaatttcaagcctaattttact 11175455  T
Q  286 aataaatatttcatcaacaatattataaatcaattaat 323  Q
     |||||||||| ||||||||||||||||||||| ||||    
T  11175456 tataaatatttgatcaacaatattataaatcaagtaat 11175493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 187 - 338
Target Start/End: Complemental strand, 43120875 - 43120720
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttat----atttcaagcttaatttt 282  Q
    ||||||||| || || ||||||||||| ||| ||||| ||||| |||||||| ||| ||||||||||||||| || | |    ||||||| | |||||||    
T  43120875 tttaacattaagatggtaggtccaaaagtgcttatgatatcaaacatgattacttatacacattttcttcttcttgtttttgaatttcaaacctaatttt 43120776  T
Q  283 acaaataaatatttcatcaacaatattataaatcaattaattaatcaattctattt 338  Q
    ||| |||||||||| ||||||||||||||||||||| ||||  ||||||| |||||    
T  43120775 acatataaatatttaatcaacaatattataaatcaagtaatcgatcaattttattt 43120720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 332
Target Start/End: Complemental strand, 26916402 - 26916226
Alignment:
Q  159 aactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttctt 258  Q
    ||||| ||| ||||||| |||| |||| ||||| ||| ||||| ||||| ||||| ||  ||||||||||| |||||||| | || || |||||||||||    
T  26916402 aacttcgttaaaatgtgcttatggaccatttaaaattaaggtggtaggttcaaaagtgtttatgacatcaaccatgattactaacgcatattttcttctt 26916303  T
Q  259 gttttatat---ttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
     || | | |   || ||| ||||||||| |||||||||||||||||| | ||||||||||||| ||| | |||||||    
T  26916302 cttatttttgaatttaagtttaattttataaataaatatttcatcaatagtattataaatcaagtaaatgatcaatt 26916226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 315
Target Start/End: Original strand, 35170742 - 35170932
Alignment:
Q  129 aatatttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatc 227  Q
    ||||||||| || ||| ||| ||||||||| ||||| ||| |||||||||||| |||| ||||||||| || || || ||||||||  |  |||||||||    
T  35170742 aatatttaccctgtcatccatcttttcagctaacttcgttaaaatgtgtttatggaccgtttaacattaagatggtaagtccaaaagagtttatgacatc 35170841  T
Q  228 aagcatgattagttacacacattttcttct---tgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaat 315  Q
    ||  ||||||| ||| ||||||||||||||   | ||||  |  |||||| |||| ||| | |||||||||| || |||||||||||||||    
T  35170842 aaagatgattacttatacacattttcttcttcgtatttttgaaatcaagcctaatattagagataaatatttgataaacaatattataaat 35170932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 32350797 - 32350906
Alignment:
Q  149 cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacaca 248  Q
    ||||||||| |||||  || ||| ||| |||| |||| ||||||||| || ||||||||| |||| ||  ||||||||||| |||||||| ||| |||||    
T  32350797 cttttcagctaacttcattaaaaagtgcttatagaccatttaacattaagatgataggtctaaaagtgtttatgacatcaaacatgattacttatacaca 32350896  T
Q  249 ttttcttctt 258  Q
    ||||||||||    
T  32350897 ttttcttctt 32350906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 32367458 - 32367567
Alignment:
Q  149 cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacaca 248  Q
    ||||||||| |||||  || ||| ||| |||| |||| ||||||||| || ||||||||| |||| ||  ||||||||||| |||||||| ||| |||||    
T  32367458 cttttcagctaacttcattaaaaagtgcttatagaccatttaacattaagatgataggtctaaaagtgtttatgacatcaaacatgattacttatacaca 32367557  T
Q  249 ttttcttctt 258  Q
    ||||||||||    
T  32367558 ttttcttctt 32367567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 341
Target Start/End: Original strand, 4187298 - 4187456
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaa-tgcgtatgacatcaagcatgattagttacacacattttcttctt---gttttatatttcaagcttaatttt 282  Q
    |||||||||||||||  ||||||||  | ||  ||||||||||| |||||||| ||||| ||||| |||||||   ||||| || || || | ||| |||    
T  4187298 tttaacattgaggtggaaggtccaattagtgtttatgacatcaaacatgattacttacatacattatcttcttattgttttctaatttaatcctaaattt 4187397  T
Q  283 acaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaa 341  Q
    | | |||||||||||||||||||  ||||||||||| |||| |||||||| | ||||||    
T  4187398 atagataaatatttcatcaacaacgttataaatcaagtaatcaatcaattttgtttcaa 4187456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 310
Target Start/End: Original strand, 10839653 - 10839763
Alignment:
Q  203 taggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttct---tcttgttttatatttcaagcttaattttacaaataaatatttcat 299  Q
    ||||||||||| ||  ||| ||||||| ||||||||  ||| ||||||||||   |||||||||  | |||||| || |||||||| |||||||||||||    
T  10839653 taggtccaaaagtgtctattacatcaaacatgattacctacgcacattttcttcttcttgtttttgaattcaagtttgattttacatataaatatttcat 10839752  T
Q  300 caacaatatta 310  Q
    |||||||||||    
T  10839753 caacaatatta 10839763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 332
Target Start/End: Complemental strand, 31447329 - 31447176
Alignment:
Q  182 gaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacatttt---cttcttgttttatatttcaagcttaa 278  Q
    |||| ||||||||| || || ||| | | ||| ||| ||||||||||| |||||||| ||  |||||||||   |||||| ||||  | ||||||| |||    
T  31447329 gaccatttaacattaagatggtagattctaaagtgcttatgacatcaaacatgattacttgtacacattttactcttcttatttttgaattcaagcctaa 31447230  T
Q  279 ttttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    ||||||| |||| ||||| |  |||||||||||| ||||| |||| ||||||||    
T  31447229 ttttacagataattattttaaaaacaatattatagatcaagtaatcaatcaatt 31447176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 332
Target Start/End: Original strand, 40112659 - 40112753
Alignment:
Q  240 ttacacacattttcttctt--gttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    ||||||||||||| |||||  |||||  | ||||||| |||||||    |||||||||||||| ||||||||||||||||| |||| ||||||||    
T  40112659 ttacacacatttttttcttatgtttttgagttcaagcctaatttttttgataaatatttcatcgacaatattataaatcaagtaatcaatcaatt 40112753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 4606317 - 4606251
Alignment:
Q  249 ttttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaat 315  Q
    ||||||||||||||| || ||||||| ||||||||||  ||| ||||||||||| ||||||| ||||    
T  4606317 ttttcttcttgttttttaattcaagcataattttacaggtaagtatttcatcaataatattaaaaat 4606251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 347
Target Start/End: Original strand, 12076462 - 12076617
Alignment:
Q  197 aggtgataggtccaaaaatgcg--tatgacatcaagcatgattagttacacacattttcttcttgttttatatttcaagcttaattttacaaataaatat 294  Q
    ||||||||||||||||| || |  |||||||| |  |||||||| |||| |||||| || | |||||||  |  |||| | |||||||||||||||| ||    
T  12076462 aggtgataggtccaaaattgtgcttatgacatgacacatgattacttacgcacattctcattttgtttttcaaatcaatcataattttacaaataaacat 12076561  T
Q  295 ttc---atcaacaatattataaatcaattaattaatcaattctatttcaagtcaaa 347  Q
    | |   |||||||||||||||| |||| |||| ||||| || |||||||| |||||    
T  12076562 tactttatcaacaatattataattcaagtaatcaatcacttttatttcaaatcaaa 12076617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 37295124 - 37295047
Alignment:
Q  254 ttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaat 331  Q
    |||||||||| || ||||||| |||| |||||||| ||||||||||||| | ||||||| || ||| || ||||||||    
T  37295124 ttcttgttttttaattcaagcctaatgttacaaatgaatatttcatcaaaagtattatatataaatcaagtaatcaat 37295047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 1823439 - 1823551
Alignment:
Q  203 taggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgtttta-tatttcaagcttaattttacaaataaatatttcatca 301  Q
    ||||||||||  ||| | ||||||||| || |||||  || |||||||||||| |||||||  ||  | ||||||||||||||  |||||||||| || |    
T  1823439 taggtccaaatgtgcttgtgacatcaaacaagattacctatacacattttctttttgtttttgtacatgaagcttaattttacctataaatatttgatta 1823538  T
Q  302 acaatattataaa 314  Q
    |||||||||||||    
T  1823539 acaatattataaa 1823551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 1857884 - 1857996
Alignment:
Q  203 taggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgtttta-tatttcaagcttaattttacaaataaatatttcatca 301  Q
    ||||||||||  ||| | ||||||||| || |||||  || |||||||||||| |||||||  ||  | ||||||||||||||  |||||||||| || |    
T  1857884 taggtccaaatgtgcttgtgacatcaaacaagattacctatacacattttctttttgtttttgtacatgaagcttaattttacctataaatatttgatta 1857983  T
Q  302 acaatattataaa 314  Q
    |||||||||||||    
T  1857984 acaatattataaa 1857996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 28452052 - 28452094
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    |||||||| | ||||||||||||| ||||||||||||||||||    
T  28452052 taattttaaagataaatatttcattaacaatattataaatcaa 28452094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 125 - 317
Target Start/End: Complemental strand, 15183992 - 15183795
Alignment:
Q  125 atagaatatttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatga 223  Q
    |||||||||||||||||||| ||| ||||| ||| ||||| ||| ||| ||| |||| |||| ||||||||| || || ||||||||||| ||| |||||    
T  15183992 atagaatatttacactatcatccatctttttagccaacttcgttaaaaagtgcttatagaccatttaacattaagatggtaggtccaaaagtgcttatga 15183893  T
Q  224 catcaagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttcatcaacaatattataaatca 317  Q
    |||||| |||||||| || | ||||||||||||||||| | |    ||||||| | |||||||||| |||||||||| |||||| |||||||||||||    
T  15183892 catcaaacatgattacttgcgcacattttcttcttgttgtttttgaatttcaaacctaattttacatataaatatttgatcaacgatattataaatca 15183795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 323
Target Start/End: Original strand, 31165624 - 31165792
Alignment:
Q  159 aactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttctt 258  Q
    ||||| ||| ||| ||| |||| |||| ||||||||| || || ||||||||||| ||| ||||||||||| |||||||| ||| |||||||||||||||    
T  31165624 aacttcgttaaaacgtgcttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacatgattacttatacacattttcttctt 31165723  T
Q  259 gttttat----atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
     || | |    |||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||    
T  31165724 cttgtttttgaatttcaagcttaattttacatataaatatttgttcaacaatattataaatcaagtaat 31165792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 332
Target Start/End: Complemental strand, 31065326 - 31065112
Alignment:
Q  123 ttatagaatatttacactatcacccactttt-cagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtat 221  Q
    |||||||||||||||| | ||| ||| |||| |||| ||||| ||| ||| ||| |||| |||| ||| | ||| || || ||||||||||||||| |||    
T  31065326 ttatagaatatttacattgtcatccattttttcagccaacttcgttaaaaagtgcttatagaccatttgaaattaagatggtaggtccaaaaatgcttat 31065227  T
Q  222 gacatcaagcatgattagttacacacatttt---cttcttgttt-tatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatca 317  Q
    || ||||| |||||||| ||| |||||||||   |||||||||| |  ||||||||| |||||||||| |||||||||| |||||| |||||||||||||    
T  31065226 gatatcaaacatgattacttatacacatttttttcttcttgtttctgaatttcaagcctaattttacatataaatattttatcaacgatattataaatca 31065127  T
Q  318 attaattaatcaatt 332  Q
    | ||||  |||||||    
T  31065126 agtaatagatcaatt 31065112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 4080506 - 4080388
Alignment:
Q  223 acatcaagcatgattagttacacacattttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaa 322  Q
    ||||||| ||||||||||||| || ||||||||||||||||  | || |||| |||||||||| ||||||||||||| |||||||||| ||||||| |||    
T  4080506 acatcaaacatgattagttactcatattttcttcttgtttttgaatttaagcataattttacagataaatatttcattaacaatattacaaatcaagtaa 4080407  T
Q  323 ttaatcaattctatttcaa 341  Q
    |  ||||||| | ||||||    
T  4080406 tcgatcaattttgtttcaa 4080388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 27458308 - 27458425
Alignment:
Q  219 tatgacatcaagcatgattagttacacacattttcttctt---gttttata-tttcaagcttaattttacaaataaatatttcatcaacaatattataaa 314  Q
    ||||||||||| |||||||| ||| |||||||||||||||   ||||| || |||||| | |||||||||| |||||||||| |||||||||||||||||    
T  27458308 tatgacatcaaacatgattacttatacacattttcttcttcttgttttttaatttcaaacataattttacatataaatatttgatcaacaatattataaa 27458407  T
Q  315 tcaattaattaatcaatt 332  Q
    |||| |||| | ||||||    
T  27458408 tcaagtaatcagtcaatt 27458425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 324
Target Start/End: Complemental strand, 35307369 - 35307166
Alignment:
Q  125 atagaatatttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatga 223  Q
    |||||||||||||||| ||| ||| ||||||||| ||||| ||| ||| |||||||| || | ||||||||| || || ||||||||||| ||  | |||    
T  35307369 atagaatatttacactgtcatccatcttttcagccaacttcgttaaaaagtgtttatagatcatttaacattaagatggtaggtccaaaagtgtttttga 35307270  T
Q  224 catcaagcatgattagttacacac-attttcttcttgttttat-atttcaagcttaat-tttacaaataaatatttcatcaacaatattataaatcaatt 320  Q
    |||||| |||||||| ||| ||||  |||| |||||||||| | ||||||||  || | |||||| ||||| |||| |||||||||||||||||| | ||    
T  35307269 catcaaacatgattacttatacactttttttttcttgttttttaatttcaagtctagtatttacatataaacatttgatcaacaatattataaataagtt 35307170  T
Q  321 aatt 324  Q
    ||||    
T  35307169 aatt 35307166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 26801277 - 26801387
Alignment:
Q  223 acatcaagcatgattagttacacacattttcttcttgttttat-atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaatta 321  Q
    |||||||  ||||||| |||||||||| ||||||||||||| | | ||||||| |||||||| ||||||| |||||||||| ||||||||||||||| ||    
T  26801277 acatcaaatatgattacttacacacatattcttcttgtttttttaattcaagcataattttataaataaacatttcatcaagaatattataaatcaaata 26801376  T
Q  322 attaatcaatt 332  Q
    ||  |||||||    
T  26801377 atcgatcaatt 26801387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 51062176 - 51062232
Alignment:
Q  268 ttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaatt 324  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  51062176 ttcaatcttaattttacaaataaatatttcttcaacaacattataaatcaattaatt 51062232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 307
Target Start/End: Original strand, 14578424 - 14578586
Alignment:
Q  149 cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacaca 248  Q
    ||||||||| |||||| || ||| ||  |||| || | ||||||||| || || |||||| ||||  || ||||||||||| |||||||| ||| |||||    
T  14578424 cttttcagctaactttattaaaaagtacttatagatcatttaacattaagatggtaggtctaaaagggcttatgacatcaaacatgattacttatacaca 14578523  T
Q  249 ---ttttcttcttgttttat-atttcaagcttaattttacaaataaatatttcatcaacaata 307  Q
       ||||||||||||||| | |||| |||| |||||||||| |||||||||| |||| |||||    
T  14578524 tttttttcttcttgttttttaatttaaagcctaattttacatataaatatttgatcatcaata 14578586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 329
Target Start/End: Complemental strand, 2765696 - 2765555
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttctt---cttgttttatatttcaagcttaatttta 283  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| ||| |    ||||||| ||||||||   |||||| |  | ||  ||| ||||| |     
T  2765696 tttaacattgaggtgatagatccaaaaatgcttatgacatcaaacatta----ttacacatattttcttctacttgttcttgaatttgagcctaattgtt 2765601  T
Q  284 caaataaatatttcatcaacaatattataaatcaattaattaatca 329  Q
    || || || |||||||||||||||||||||||||| |||| |||||    
T  2765600 cacattaaaatttcatcaacaatattataaatcaagtaatcaatca 2765555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 30440623 - 30440709
Alignment:
Q  232 atgattagttacacacattttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    ||||||||||||||  |||||||| |||||||  | ||||| | |||||||| | |||| |||||||||||| ||||||||||||||    
T  30440623 atgattagttacacttattttctttttgtttttgaattcaaacctaattttatatataagtatttcatcaacgatattataaatcaa 30440709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 32893812 - 32893739
Alignment:
Q  268 ttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaa 341  Q
    ||||| |||||||||||| |||||||||||| |||||| ||||||| |||| ||||  ||||||| ||||||||    
T  32893812 ttcaatcttaattttacagataaatatttcaacaacaacattataattcaagtaatagatcaattttatttcaa 32893739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 323
Target Start/End: Original strand, 48496985 - 48497124
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttctt---gttttatatttcaagcttaatttta 283  Q
    ||||||||||||||| ||||| |||||  || ||||| |||||  | ||||| ||||||| ||||| |||||   |||||  | ||||||||||||||||    
T  48496985 tttaacattgaggtggtaggttcaaaagggcttatgatatcaaataggattacttacacaaattttattcttattgtttttgaattcaagcttaatttta 48497084  T
Q  284 caaataaatatttcatcaacaatattataaatcaattaat 323  Q
     | || ||||||| ||||||||  ||||||||||| ||||    
T  48497085 gagatgaatattttatcaacaactttataaatcaaataat 48497124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 37126594 - 37126535
Alignment:
Q  289 aaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaagtcaaaa 348  Q
    ||||||||||| |||||||||||||||||| |||  |||||||| |||||||| ||||||    
T  37126594 aaatatttcattaacaatattataaatcaaataacaaatcaattttatttcaaatcaaaa 37126535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 23532929 - 23532831
Alignment:
Q  210 aaaaatgcgtatgacatcaagcatgattagttacacacattttcttctt---gttttatatttcaagcttaattttacaaataaatatttcatcaacaa 305  Q
    |||||||| ||||||| ||| ||| |||| ||||| |||||||||||||   |||||  | || || |||||||||| | |||||||||||||||||||    
T  23532929 aaaaatgcttatgacaccaaacataattacttacatacattttcttcttattgtttttcaatttaatcttaattttatagataaatatttcatcaacaa 23532831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 348
Target Start/End: Complemental strand, 42242132 - 42241979
Alignment:
Q  191 acattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttctt-gttttatatttcaagcttaattttacaaata 289  Q
    |||||||| || |||||||||||||   |||||||   | ||| |||| |||| || ||||||||||| |||||  | | ||||| ||||||||| | ||    
T  42242132 acattgagatggtaggtccaaaaatatctatgaca---aacatcattacttacgcatattttcttctttgtttttgaatgcaagcataattttacga-ta 42242037  T
Q  290 aatatttcatcaacaatattataaatcaattaattaatcaattctatttcaagtcaaaa 348  Q
    || |||||||||||||||||||||||||| ||||  ||||| ||||||| || ||||||    
T  42242036 aacatttcatcaacaatattataaatcaagtaatcgatcaa-tctattttaaatcaaaa 42241979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 15939204 - 15939271
Alignment:
Q  251 ttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    ||||||| |||||  | ||||| | |||||||||| |||||||||||||||| | |||||||||||||    
T  15939204 ttcttctagtttttgaattcaaccctaattttacatataaatatttcatcaatagtattataaatcaa 15939271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 4408310 - 4408380
Alignment:
Q  268 ttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctattt 338  Q
    ||||| ||||||||||   ||||||||||||| ||||| |||||||||||| ||||| || |||| |||||    
T  4408310 ttcaatcttaattttattgataaatatttcattaacaaaattataaatcaaataattgattaattttattt 4408380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 52650894 - 52650936
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    ||||||||||||||| ||||||||||| || ||||||||||||    
T  52650894 taattttacaaataagtatttcatcaataacattataaatcaa 52650936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 28226763 - 28226692
Alignment:
Q  231 catgattagttacacacattttct---tcttgttttatatttcaagcttaattttacaaataaatatttcat 299  Q
    |||||| |||||||||||||||||   |||||||||  | ||||| || |||||||||||||||| ||||||    
T  28226763 catgatcagttacacacattttctccttcttgttttcgaattcaaactcaattttacaaataaatgtttcat 28226692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 39789638 - 39789593
Alignment:
Q  269 tcaagcttaattttacaaataaatatttcatcaacaatattataaa 314  Q
    |||| |||||||| | | ||||||||||||||||||||||||||||    
T  39789638 tcaatcttaatttcagacataaatatttcatcaacaatattataaa 39789593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 42669064 - 42669027
Alignment:
Q  287 ataaatatttcatcaacaatattataaatcaattaatt 324  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  42669064 ataaatatttcatcaacaacattataaatcaagtaatt 42669027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 12512409 - 12512465
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    |||||||||| |||||  ||| ||||||||||||||||||||| ||| | |||||||    
T  12512409 taattttacagataaacgtttgatcaacaatattataaatcaaataactgatcaatt 12512465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 24754989 - 24754961
Alignment:
Q  276 taattttacaaataaatatttcatcaaca 304  Q
    |||||||||||||||||||||||||||||    
T  24754989 taattttacaaataaatatttcatcaaca 24754961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 129 - 332
Target Start/End: Complemental strand, 16194451 - 16194243
Alignment:
Q  129 aatatttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatc 227  Q
    |||||||||||  ||| ||| ||||||||| ||||| ||| ||| |||||||| |||| ||||||||| || || ||||||||||| ||| |||||||||    
T  16194451 aatatttacaccgtcatccatcttttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatc 16194352  T
Q  228 aagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
    || | |||||| | | ||||||||||||||| || | |    ||||||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  16194351 aaacgtgattactcatacacattttcttctttttgtttttgaatttcaagcctaattttacatataaatatttgatcaacaatattataaatcaagtaat 16194252  T
Q  324 taatcaatt 332  Q
      |||||||    
T  16194251 cgatcaatt 16194243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 8795836 - 8795703
Alignment:
Q  203 taggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttca 298  Q
    ||||||||||| | | |||||||||| ||||||||| ||| ||||||||||||||| || | |    ||||||| | |||||||||| |||||||||| |    
T  8795836 taggtccaaaagtacttatgacatcatgcatgattatttatacacattttcttcttattgtttttgaatttcaaacataattttacatataaatatttga 8795737  T
Q  299 tcaacaatattataaatcaattaattaatcaatt 332  Q
    |||||||||||||||||||| ||||| |||||||    
T  8795736 tcaacaatattataaatcaagtaattgatcaatt 8795703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 36260806 - 36260960
Alignment:
Q  177 ttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttatatttcaagctt 276  Q
    |||| |||| |||||||||||| || ||||||||| | | | |||  |||||| |||||||| |||| ||||||||| |||||||||  | ||||| |||    
T  36260806 ttatagaccatttaacattgagttggtaggtccaatagtacttatttcatcaaacatgatta-ttactcacattttcatcttgtttttgaattcaaactt 36260904  T
Q  277 aattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    ||||||||  ||||||||||| |||||||||||||||||||| ||||  |||||||    
T  36260905 aattttacggataaatatttcttcaacaatattataaatcaagtaatcgatcaatt 36260960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 332
Target Start/End: Original strand, 29306170 - 29306347
Alignment:
Q  159 aactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttctt 258  Q
    ||||| ||| ||| |||||||| |||| ||||| ||| || || ||||| ||||| ||| ||||||||||| ||| |||| ||| |||||||||||||||    
T  29306170 aacttcgttgaaaagtgtttatagaccatttaatattaagatggtaggttcaaaagtgcttatgacatcaaacattattacttatacacattttcttctt 29306269  T
Q  259 gttttat----atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
     || | |    |||||||||  ||||||||| |||||||||| |||||| |||||||||||||| ||||  |||||||    
T  29306270 cttgtttttgaatttcaagccaaattttacatataaatatttgatcaaccatattataaatcaagtaatcgatcaatt 29306347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 348
Target Start/End: Original strand, 33282669 - 33282843
Alignment:
Q  176 tttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttctt---gttttata-tttca 271  Q
    ||||| |||| ||| ||||||||||| ||||||| ||| |   ||||||||||| |||||||| ||||| |||||||||||||   ||||| || |||||    
T  33282669 tttatggaccatttgacattgaggtggtaggtccgaaagta--tatgacatcaaacatgattacttacatacattttcttcttcttgttttgtaatttca 33282766  T
Q  272 agcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaagtcaaaa 348  Q
    | | ||||||||||||||||||||| | ||||||| | ||||||||| | ||  ||||||| | |||||| ||||||    
T  33282767 aacataattttacaaataaatattttaccaacaatttcataaatcaagtgatagatcaattttttttcaaatcaaaa 33282843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 43369820 - 43369920
Alignment:
Q  219 tatgacatcaagcatgattagttacacacattttcttcttgttttatat---ttcaagcttaattttacaaataaatatttcatcaacaatattataaat 315  Q
    ||||||||||| |||||||| ||| |||||| |||||||| || | | |   ||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  43369820 tatgacatcaaacatgattacttatacacatattcttcttattatttttgaattcaagcataattttacaaataaatatttaatcaacaaaattataaat 43369919  T
Q  316 c 316  Q
    |    
T  43369920 c 43369920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 29491085 - 29491012
Alignment:
Q  250 tttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
    |||||| |||||||  | ||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  29491085 tttcttattgtttttcaattcaatcttaattttacagataaatatttcatcgacaatattataaatcaaataat 29491012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 18680911 - 18680782
Alignment:
Q  207 tccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttcatcaa 302  Q
    ||||||| ||| ||||||| | | |||||||| ||| ||||||||||||||| || | |    ||||||||| |||||| | | ||| |||||| |||||    
T  18680911 tccaaaagtgcttatgacaaccaacatgattatttatacacattttcttcttcttgtttttgaatttcaagcctaatttcatatatagatattttatcaa 18680812  T
Q  303 caatattataaatcaattaattaatcaatt 332  Q
    |||||||||||||||| ||||  |||||||    
T  18680811 caatattataaatcaagtaatcgatcaatt 18680782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 30537565 - 30537505
Alignment:
Q  280 tttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttca 340  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||  ||||||| |||||||    
T  30537565 tttacaaataaatagttcatcaacaacattgtaaatcaattaatcgatcaattttatttca 30537505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 15863544 - 15863583
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaat 315  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  15863544 taattttactaataaatattttatcaacaatattataaat 15863583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 44108118 - 44108168
Alignment:
Q  268 ttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    ||||| |||||||||||| |||||||||| || ||||| ||||||||||||    
T  44108118 ttcaaacttaattttacacataaatattttatgaacaacattataaatcaa 44108168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 2757277 - 2757333
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttac 243  Q
    |||||||||||||||| ||||| |||||||| ||||| ||||| |||| ||| ||||    
T  2757277 tttaacattgaggtgagaggtctaaaaatgcttatgatatcaaacatggttacttac 2757333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 17549819 - 17549763
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    |||||||||| ||||||||||||||| ||| ||| |||||||| ||||  |||||||    
T  17549819 taattttacagataaatatttcatcatcaacattgtaaatcaactaatcgatcaatt 17549763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 129 - 324
Target Start/End: Complemental strand, 5188118 - 5187918
Alignment:
Q  129 aatatttacactatca-cccacttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatc 227  Q
    |||||||||||| ||| ||| ||||||||| ||||| ||| ||| |||||||| |||| | ||||||| || || ||||||||||| ||  |||||||||    
T  5188118 aatatttacactgtcatccctcttttcagccaacttcgttaaaaagtgtttatagaccatgtaacattaagatgttaggtccaaaagtgtttatgacatc 5188019  T
Q  228 aagcatgattagttacacacattttc---ttcttg-ttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
    || |||||||| ||| ||||||||||   |||||| ||||| ||||||| | |||||||||| |||||||||| || ||||||||||||||| || ||||    
T  5188018 aaacatgattatttatacacattttcttgttcttgtttttaaatttcaaacctaattttacatataaatatttgatgaacaatattataaattaagtaat 5187919  T
Q  324 t 324  Q
    |    
T  5187918 t 5187918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 207 - 323
Target Start/End: Complemental strand, 9298898 - 9298778
Alignment:
Q  207 tccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgtt----ttatatttcaagcttaattttacaaataaatatttcatcaa 302  Q
    ||||||| ||| ||||||||||| |||||||| ||| ||||||||||||||| ||    || ||||||||||||||||||||| |||||||||| |||||    
T  9298898 tccaaaagtgcttatgacatcaatcatgattacttatacacattttcttcttcttgtttttgtatttcaagcttaattttacatataaatatttgatcaa 9298799  T
Q  303 caatattataaatcaattaat 323  Q
    |||||||||||||||| ||||    
T  9298798 caatattataaatcaaataat 9298778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 347
Target Start/End: Complemental strand, 1130938 - 1130741
Alignment:
Q  151 tttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacatt 250  Q
    ||||||| ||||| ||| ||| ||||| || |||| ||||||||||| ||| || |||||||| ||| |||||||| || |||||||  |||| ||||||    
T  1130938 tttcagccaacttcgttaaaaggtgttcatggaccatttaacattgaagtggtaagtccaaaagtgcttatgacataaaacatgatttcttacgcacatt 1130839  T
Q  251 ttcttcttgttttatatttcaagcttaattttacaaataaata-tttcatcaacaatattataaatcaattaattaatcaattctatttcaagtcaaa 347  Q
    || ||||||||||  | ||||||| |||||||||| ||||||| ||| ||||| |  |||||||||||| |||| |||||||| | |||||| |||||    
T  1130838 ttgttcttgtttttgaattcaagcctaattttacagataaatatttttatcaaaagcattataaatcaagtaatcaatcaattttgtttcaaatcaaa 1130741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 332
Target Start/End: Original strand, 10221474 - 10221682
Alignment:
Q  129 aatatttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatc 227  Q
    |||||||||||| ||| | | ||||||||| ||||| ||| |||  || |||| |||| ||||||||| || || |||||  |||||||| ||||| |||    
T  10221474 aatatttacactctcatctatcttttcagccaacttcgttaaaacatgcttatagaccatttaacattaagatggtaggttaaaaaatgcttatgatatc 10221573  T
Q  228 aagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
    || |||||||| ||| ||||||||||||||| || | |    ||||||||| |||||  ||| |||||||||| ||||||||||||||||||||| ||||    
T  10221574 aaacatgattacttatacacattttcttcttcttatttttgaatttcaagcctaattgaacatataaatatttgatcaacaatattataaatcaaataat 10221673  T
Q  324 taatcaatt 332  Q
    || ||||||    
T  10221674 tagtcaatt 10221682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 348
Target Start/End: Complemental strand, 45707331 - 45707211
Alignment:
Q  231 catgattagttacacacattttcttctt---gttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaat 327  Q
    |||||| | ||||||| |||||||||||   |||||  | |||||||||||||||| |||||||||||||||| ||||| |||||||||| ||||| |||    
T  45707331 catgataacttacacatattttcttcttcgtgttttcaaattcaagcttaattttagaaataaatatttcatccacaattttataaatcagttaatcaat 45707232  T
Q  328 caattctatttcaagtcaaaa 348  Q
    ||||| |||||||| ||||||    
T  45707231 caattttatttcaaatcaaaa 45707211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 315
Target Start/End: Original strand, 83562 - 83706
Alignment:
Q  174 tgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttct---tgttttatatttc 270  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||  |||| |||||| |||||||  |||  |||||||||||||   |||| |  | |||    
T  83562 tgtttatcgaccatttaacattgaggtggtaggtccaaaagtgtttatgtcatcaaacatgattgcttatgcacattttcttcttcatgttattgaattc 83661  T
Q  271 aagcttaattttacaaataaatatttcatcaacaatattataaat 315  Q
    |||  |||||||||| |||||| |||||||||||| |||||||||    
T  83662 aagtctaattttacagataaatttttcatcaacaacattataaat 83706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 7818288 - 7818214
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgtttt 263  Q
    ||||||||||||||||||||| |||||  || |||||||||||  ||||||| |||| |||||||||||||||||||    
T  7818288 tttaacattgaggtgataggttcaaaa--gcttatgacatcaaatatgattacttactcacattttcttcttgtttt 7818214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 9158820 - 9158759
Alignment:
Q  271 aagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||    
T  9158820 aagcataattttataaataaatatttcatcaacaatattacaaatcaataaattgatcaatt 9158759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 18704892 - 18704737
Alignment:
Q  163 ttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacaca---ttttcttcttg 259  Q
    ||||| ||| |||||||| || | ||||| ||| || || ||||||||||| ||| ||||||| ||| ||| |||| |||  || |   |||||||||||    
T  18704892 ttgttaaaaagtgtttatggatcatttaatattaagatggtaggtccaaaagtgcttatgacaacaaacataattacttatgcatatatttttcttcttg 18704793  T
Q  260 ttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaat 315  Q
     |||  | ||||||| |||||||||| |||||||||| ||||||||||||||||||    
T  18704792 cttttgaattcaagcctaattttacagataaatattttatcaacaatattataaat 18704737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 41437531 - 41437434
Alignment:
Q  235 attagttacacacattttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    |||| |||| || |||| |||||  |||| || ||||| |||||||||| ||||||||||||||||||||| ||||||||| || ||||| |||||||    
T  41437531 attacttacgcatatttccttctcattttttaattcaaacttaattttataaataaatatttcatcaacaacattataaattaagtaattgatcaatt 41437434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 317
Target Start/End: Complemental strand, 43081036 - 43080896
Alignment:
Q  177 ttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttatatttcaagctt 276  Q
    |||| |||| ||||||||| || || || || ||||| ||  ||||||||||| ||||| || ||| |||||||||||| || |||   | ||||||| |    
T  43081036 ttatagaccatttaacattaagatggtaagttcaaaagtgtttatgacatcaaacatgagtacttatacacattttcttattatttataaattcaagcct 43080937  T
Q  277 aattttacaaataaatatttcatcaacaatattataaatca 317  Q
    ||||||| | |||||||||| |||||||| |||||||||||    
T  43080936 aattttatagataaatatttgatcaacaagattataaatca 43080896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 323
Target Start/End: Original strand, 33428792 - 33428930
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacatttt--cttcttgttttatatttcaagcttaattttac 284  Q
    ||||||||||||||| || || ||||| ||  |||||||||||  ||||||| ||||   | ||||  |||||| ||||  | |||||||||||||||||    
T  33428792 tttaacattgaggtggtatgttcaaaagtgtttatgacatcaaatatgattacttacttgccttttttcttcttctttttgaattcaagcttaattttac 33428891  T
Q  285 aaataaatatttcatcaacaatattataaatcaattaat 323  Q
       ||||||||| ||||||||||||||||||||| ||||    
T  33428892 ggttaaatattttatcaacaatattataaatcaaataat 33428930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 323
Target Start/End: Original strand, 37817596 - 37817717
Alignment:
Q  206 gtccaaaaatgcgtatgacatcaagcatgattagttacacaca-ttttcttctt---gttttatatttcaagcttaattttacaaataaatatttcatca 301  Q
    |||||||| ||| ||||||||||| ||  |||| ||| ||||| ||||||||||   ||||| || ||||||| |||||||||| |||||||||| ||||    
T  37817596 gtccaaaagtgcttatgacatcaaacaaaattacttaaacacatttttcttcttcaagttttttaattcaagcctaattttacatataaatattttatca 37817695  T
Q  302 acaatattataaatcaattaat 323  Q
    |||||| |||||| ||| ||||    
T  37817696 acaatactataaagcaagtaat 37817717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 21437168 - 21437064
Alignment:
Q  220 atgacatcaagcatgattagttacacacatttt-cttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    |||||||||| |||||||| ||| ||| ||||| |||||| ||||  | ||| | | |||||||||| |||||||||| |||||||| ||||||||||||    
T  21437168 atgacatcaaacatgattacttatacatatttttcttcttatttttgaattccaacctaattttacagataaatatttgatcaacaacattataaatcaa 21437069  T
Q  319 ttaat 323  Q
     ||||    
T  21437068 gtaat 21437064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 14201615 - 14201516
Alignment:
Q  243 cacacattttcttcttgttttat-atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaa 341  Q
    |||||||||||||| |||||| | | | ||| | ||||||||  ||||||||||| |||||||| |||||||||||| |||| |||||||| | ||||||    
T  14201615 cacacattttcttcatgttttttgaatccaaacctaattttaataataaatattttatcaacaacattataaatcaagtaatcaatcaattttgtttcaa 14201516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 11862328 - 11862389
Alignment:
Q  280 tttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaa 341  Q
    |||||| ||||||||||||||||||| |||||||||||| ||||  ||||||| | ||||||    
T  11862328 tttacagataaatatttcatcaacaaaattataaatcaagtaatcgatcaattttgtttcaa 11862389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 17200700 - 17200752
Alignment:
Q  287 ataaatatttcatcaacaatattataaatcaattaattaatcaattctatttc 339  Q
    |||||||||||||||||||||||||||||||| | ||  ||||||| ||||||    
T  17200700 ataaatatttcatcaacaatattataaatcaagtgatcgatcaattttatttc 17200752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 318
Target Start/End: Complemental strand, 36472509 - 36472376
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttctt----gttttatatttcaagcttaatttt 282  Q
    |||||||||||||||| || || |||| ||  ||||||||||| | | |||| |||||||  ||||||||||    |||||  | ||||||| ||| |||    
T  36472509 tttaacattgaggtgagagatctaaaagtgtttatgacatcaaacctaattacttacaca--ttttcttcttttttgtttttgaattcaagcctaaattt 36472412  T
Q  283 acaaataaatatttcatcaacaatattataaatcaa 318  Q
    |||  ||||||||||||||| ||||| |||||||||    
T  36472411 acaggtaaatatttcatcaagaatataataaatcaa 36472376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 43229274 - 43229333
Alignment:
Q  250 tttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatatt 309  Q
    ||||||||||||||  | || || ||||||||||||||||||||||| || |||||||||    
T  43229274 tttcttcttgtttttgaatttaaacttaattttacaaataaatattttattaacaatatt 43229333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 7401150 - 7401187
Alignment:
Q  287 ataaatatttcatcaacaatattataaatcaattaatt 324  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  7401150 ataaatatttcatcaacaaaattataaatcaagtaatt 7401187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 35341924 - 35341883
Alignment:
Q  197 aggtgataggtccaaaaatgcgtatgacatcaagcatgatta 238  Q
    |||||||||||| |||||||| ||||||||||| ||||||||    
T  35341924 aggtgataggtctaaaaatgcttatgacatcaaacatgatta 35341883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 315
Target Start/End: Original strand, 41959698 - 41959829
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattt---tcttcttgttttatatttcaagcttaatttta 283  Q
    |||||||||||| || |||||  |||||||| ||||| |||||  ||||||| | || |||||||   ||||||||||||  | ||||| | ||| ||||    
T  41959698 tttaacattgagatggtaggttgaaaaatgcatatgatatcaaatatgattactcactcacattttcctcttcttgtttttgaattcaaacctaagttta 41959797  T
Q  284 caaataaatatttcatcaacaatattataaat 315  Q
    || ||||||||| || ||| ||||| ||||||    
T  41959798 cagataaatattccagcaataatatcataaat 41959829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 35494143 - 35494079
Alignment:
Q  277 aattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaa 341  Q
    ||||||| | ||||||||||||||| |||| ||||||||||| | ||| ||||||| | ||||||    
T  35494143 aattttatagataaatatttcatcagcaattttataaatcaagtcattgatcaattttgtttcaa 35494079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 324
Target Start/End: Original strand, 11751764 - 11751963
Alignment:
Q  129 aatatttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatc 227  Q
    |||||||| ||| ||| ||| ||||||||| ||||| ||| ||| |||||||| |||| ||||||||| || || ||||||||||| ||  |||||||||    
T  11751764 aatatttatactgtcatccatcttttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatggtaggtccaaaagtgtttatgacatc 11751863  T
Q  228 aagcatgattagttacacaca--ttttcttcttgttttat-atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaatt 324  Q
    || || ||||| ||| ||| |  |||| |||||||||| | |||||||| ||||||||||| ||||| |||| ||||||||||||| ||||||| |||||    
T  11751864 aaacacgattacttatacaaatttttttttcttgttttttaatttcaagtttaattttacatataaacatttgatcaacaatattacaaatcaagtaatt 11751963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 2391390 - 2391515
Alignment:
Q  210 aaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttcatcaacaa 305  Q
    |||| ||| |||||||||||  ||||||| ||| |||||||||||| || || | |    ||||||| | |||||||||| |||||||||  ||||||||    
T  2391390 aaaagtgcttatgacatcaaatatgattacttatacacattttcttgtttttgtttttgaatttcaaacctaattttacatataaatatta-atcaacaa 2391488  T
Q  306 tattataaatcaattaattaatcaatt 332  Q
    ||||||||||||| ||||  |||||||    
T  2391489 tattataaatcaagtaatcgatcaatt 2391515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 35029931 - 35029980
Alignment:
Q  275 ttaattttacaaataaatatttcatcaacaatattataaatcaattaatt 324  Q
    ||||||||||| |||||||||||||||||||  |||||||| ||||||||    
T  35029931 ttaattttacagataaatatttcatcaacaacgttataaataaattaatt 35029980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 2760707 - 2760783
Alignment:
Q  240 ttacacacattttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatc 316  Q
    |||| ||||||||||||||  |||  | ||||||  |||||| ||||| ||||||||||| ||||||||||||||||    
T  2760707 ttacccacattttcttcttacttttaaattcaagtataatttcacaaagaaatatttcattaacaatattataaatc 2760783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 10479736 - 10479672
Alignment:
Q  268 ttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    ||||||| ||||||||||||||||||||| || || || |||||||||||| ||||  |||||||    
T  10479736 ttcaagcctaattttacaaataaatatttgattaaaaacattataaatcaagtaatcgatcaatt 10479672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 292
Target Start/End: Complemental strand, 23888319 - 23888215
Alignment:
Q  188 ttaacattgaggtgataggtccaaaaa-tgcgtatgacatcaagcatgattagttacacacattttcttcttgttttatatttcaagcttaattttacaa 286  Q
    |||||||||||||| ||| |||||||| ||| ||||||| ||| |||||||| |||| ||  |||||||||||||||  | ||||| | ||| ||||||     
T  23888319 ttaacattgaggtgctag-tccaaaaagtgcttatgacaccaaacatgattacttacgcatgttttcttcttgttttcgaattcaaacctaaatttacat 23888221  T
Q  287 ataaat 292  Q
    ||||||    
T  23888220 ataaat 23888215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 33401530 - 33401645
Alignment:
Q  203 taggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttata-tttcaagcttaattttacaaataaatatttcatca 301  Q
    ||||||||||||||| ||||||||||| |||||||| ||  | |||||||||| |||||||  | |||||||| |||||||||| |||||||||| ||||    
T  33401530 taggtccaaaaatgcttatgacatcaaacatgattacttgaaaacattttctttttgtttttgaatttcaagcctaattttacatataaatatttgatca 33401629  T
Q  302 acaatattataaatca 317  Q
    ||||||||||||||||    
T  33401630 acaatattataaatca 33401645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 859955 - 859832
Alignment:
Q  192 cattgaggtgataggtccaaaaatg-cgtatgacatcaagcatgattagttacacacattttcttcttgttttatatttcaagcttaattttacaaataa 290  Q
    ||||||||||||||||| ||||||| | |||||||| ||  ||| ||| || | ||||||||||| || ||||  | ||||| |||||||||||||||||    
T  859955 cattgaggtgataggtc-aaaaatgacttatgacataaaatatgtttatttcctcacattttctttttatttttgaattcaaacttaattttacaaataa 859857  T
Q  291 atatttcatcaacaatattataaat 315  Q
    | |||||||||||||| ||||||||    
T  859856 aaatttcatcaacaattttataaat 859832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 932714 - 932645
Alignment:
Q  248 attttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    ||||||||||||||||  |||  ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  932714 attttcttcttgtttttaattcaaagct-aattttacagataaatatttcatcaacaatattataaatcaa 932645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 341
Target Start/End: Complemental strand, 36268101 - 36267937
Alignment:
Q  177 ttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttatatttcaagctt 276  Q
    |||| |||| ||||| ||||| ||| ||||| ||||| ||| | ||| || ||  ||||||| |||||   ||||||||||||||||  | ||||| | |    
T  36268101 ttattgaccatttaatattgatgtggtaggttcaaaagtgcttgtgatattaaatatgattacttacatttattttcttcttgtttttgaattcaaacat 36268002  T
Q  277 aattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaa 341  Q
    |||||||||||||| ||||| ||||||| |||||| |||||| | || |||||||| | ||||||    
T  36268001 aattttacaaataagtatttaatcaacactattattaatcaagttatcaatcaattttgtttcaa 36267937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 302
Target Start/End: Original strand, 5177374 - 5177529
Alignment:
Q  150 ttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacat 249  Q
    |||||||||||||| ||| |||  | ||||| |||| |||||||||||| ||||| || ||||| ||  ||| ||||||| ||| || | |||  |||||    
T  5177374 ttttcagcaaacttcgttaaaaaatatttatggaccatttaacattgagttgatatgttcaaaagtgtttataacatcaaacataatcacttatgcacat 5177473  T
Q  250 tttc---ttcttgttttatatttcaagcttaattttacaaataaatatttcatcaa 302  Q
    ||||   || ||||||| |||||||| | |||||||| ||||||||| ||||||||    
T  5177474 tttcttgttgttgttttttatttcaaacctaattttataaataaatacttcatcaa 5177529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 341
Target Start/End: Original strand, 32424180 - 32424288
Alignment:
Q  232 atgattagttacacacattttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaat 331  Q
    ||||||| ||||| | ||||||||||||||||  |||  |||  |||||||||| ||||||||||| ||||||||||||||||| || ||||  ||||||    
T  32424180 atgattacttacagatattttcttcttgttttcaattg-aagactaattttacatataaatatttcctcaacaatattataaattaaataatggatcaat 32424278  T
Q  332 tctatttcaa 341  Q
    | | ||||||    
T  32424279 tttgtttcaa 32424288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 10099611 - 10099655
Alignment:
Q  279 ttttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||    
T  10099611 ttttacaaataaaaatttcatcaacaacattataaatcaagtaat 10099655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 12920431 - 12920467
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattata 312  Q
    |||||||||||||||||||||||||||||| ||||||    
T  12920431 taattttacaaataaatatttcatcaacaacattata 12920467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 252
Target Start/End: Complemental strand, 16600690 - 16600570
Alignment:
Q  133 tttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagc 231  Q
    |||||||| ||| ||| ||||||||| |||||  || |||  || |||| |||||||| ||||| || |||||||| ||||| ||  ||||||||||| |    
T  16600690 tttacactgtcatccatcttttcagccaacttcattaaaaaatgcttatagaccctttgacattaagatgataggttcaaaagtgtttatgacatcaaac 16600591  T
Q  232 atgattagttacacacatttt 252  Q
    ||||||| ||| |||||||||    
T  16600590 atgattacttatacacatttt 16600570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 341
Target Start/End: Complemental strand, 8822498 - 8822403
Alignment:
Q  249 ttttcttcttgttttatatttcaagcttaattttacaaataaatatttcatc---aacaatattataaatcaattaattaatcaattctatttcaa 341  Q
    ||||||||||||||  || ||||  ||||||||||||||||||||| | |||   ||||| |||||||||||| ||||  |||||||  |||||||    
T  8822498 ttttcttcttgtttcctaattcacacttaattttacaaataaatatattatcaataacaacattataaatcaagtaatcgatcaatttcatttcaa 8822403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 24194919 - 24195044
Alignment:
Q  219 tatgacatcaagcatgattagttacacacattttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    ||||||||||| |||||||| |||||||||||||||||||  |||  ||| ||||||||||||||||| ||||||| | |||||| ||||||||||| ||    
T  24194919 tatgacatcaaacatgattacttacacacattttcttcttaatttgaatt-caagcttaattttacaa-taaatatataatcaacgatattataaattaa 24195016  T
Q  319 ttaattaatcaattctatttcaagtcaa 346  Q
     ||||||||||||| | |||||||||||    
T  24195017 gtaattaatcaattttgtttcaagtcaa 24195044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 323
Target Start/End: Original strand, 867443 - 867644
Alignment:
Q  125 atagaatatttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgagg-tgataggtccaaaaatgcgtatg 222  Q
    |||||||||||||||||||| ||| ||||||||  ||||| ||| ||| |||||||| |||  ||||||||| | | || ||||| ||||||| | ||||    
T  867443 atagaatatttacactatcatccatcttttcagtcaacttcgttaaaaagtgtttatagactatttaacatttaagatggtaggttcaaaaatacttatg 867542  T
Q  223 acatcaagcatgattagttacacacattttc---ttcttgttttata-tttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    ||||||| |||||||| ||| | ||||||||   ||||||||||  | |||||||| |||||||||| |   |||||| |||||||||||||||||||||    
T  867543 acatcaaacatgattacttataaacattttcctcttcttgtttttgaatttcaagcctaattttacata---atatttgatcaacaatattataaatcaa 867639  T
Q  319 ttaat 323  Q
     ||||    
T  867640 ataat 867644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 323
Target Start/End: Complemental strand, 56094471 - 56094295
Alignment:
Q  151 tttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacatt 250  Q
    ||||||| |||||  || ||||||| |||| |||| ||||||||| || || ||||| ||||| ||  ||||||||||| |||||||| ||| |||||||    
T  56094471 tttcagccaacttcattaaaatgtgcttatagaccatttaacattaagatggtaggttcaaaagtgtttatgacatcaaacatgattacttatacacatt 56094372  T
Q  251 ----ttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
        |||||||| ||||  | || |||| |||||||||| |||||||||| |||||||| |||||||||||| ||||    
T  56094371 tttcttcttcttatttttgaatttaagcctaattttacagataaatatttgatcaacaacattataaatcaagtaat 56094295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 52646869 - 52646778
Alignment:
Q  219 tatgacatcaagcatgattagttacacacattttcttc---ttgttttatatttcaagcttaattttacaaataaatatttcatcaacaata 307  Q
    ||||| |||||||||||||||||| |||||||||||||   || |||| || |||||||||||||||| | ||||||| |||||||||||||    
T  52646869 tatgatatcaagcatgattagttaaacacattttcttcttattattttttaattcaagcttaattttagagataaataattcatcaacaata 52646778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 323
Target Start/End: Original strand, 42679167 - 42679365
Alignment:
Q  129 aatatttacactatcaccca-cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatc 227  Q
    |||||||||||| ||| ||| ||||||||| ||||| ||| ||| |||||||| |||| ||||||||| || |  ||||||||||| ||  ||| |||||    
T  42679167 aatatttacactgtcatccatcttttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatagtaggtccaaaagtgtttataacatc 42679266  T
Q  228 aagcatgattagttacacaca---ttttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
    || ||||||||  || ||| |   ||||||| || ||||  | ||||||| |||||||||| |||||||||| ||| ||||  ||||||||||| ||||    
T  42679267 aaacatgattacgtatacatatttttttcttattatttttgaattcaagcctaattttacagataaatatttgatcgacaacgttataaatcaagtaat 42679365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 18521307 - 18521374
Alignment:
Q  251 ttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    |||||||| ||||  | ||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  18521307 ttcttcttatttttgaattcaagcctaattttacaaataaatattccatcaacaatattataaatcaa 18521374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 26003779 - 26003841
Alignment:
Q  251 ttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataa 313  Q
    |||||||| ||||  | |||||||||||||||||| |||||||||||||||||||||||||||    
T  26003779 ttcttcttatttttgaattcaagcttaattttacagataaatatttcatcaacaatattataa 26003841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 48827748 - 48827642
Alignment:
Q  219 tatgacatcaagcatgattagttacacacatttt---cttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaat 315  Q
    ||||||||||| |||||||| |||  ||||||||   |||||||||||  | ||||||  ||||||||||||| ||||||||||| ||||||||||||||    
T  48827748 tatgacatcaa-catgattacttatgcacattttattcttcttgtttttaaattcaagtataattttacaaattaatatttcatctacaatattataaat 48827650  T
Q  316 caattaat 323  Q
    ||| ||||    
T  48827649 caagtaat 48827642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 600590 - 600535
Alignment:
Q  268 ttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||    
T  600590 ttcaagcttaattttacatataaacatttcatcaacaatattacaaatcaagtaat 600535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 25856970 - 25857045
Alignment:
Q  175 gtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacatt 250  Q
    |||||| |||| ||||||||||||||| ||| ||||||||||  ||||||||||| |||||||| |||| ||||||    
T  25856970 gtttatggaccatttaacattgaggtggtagatccaaaaatgtttatgacatcaaacatgattatttacgcacatt 25857045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 47312176 - 47312237
Alignment:
Q  251 ttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattata 312  Q
    |||||||||||||  | ||||||||| |||||||| ||||||||||||||||| ||||||||    
T  47312176 ttcttcttgtttttgaattcaagcttgattttacagataaatatttcatcaacgatattata 47312237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 5750873 - 5750744
Alignment:
Q  207 tccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttcatcaa 302  Q
    ||||||| ||| ||||||| | | |||||||| ||| ||||||||||||||| || | |    ||||||||| |||||| | | ||| |||||| |||||    
T  5750873 tccaaaagtgcttatgacaaccaacatgattatttatacacattttcttcttcttgtttttgaatttcaagcctaatttcatatatagatattttatcaa 5750774  T
Q  303 caatattataaatcaattaattaatcaatt 332  Q
    |||||||||||||||| ||||  |||||||    
T  5750773 caatattataaatcaagtaatcgatcaatt 5750744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 26645104 - 26644986
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttc---ttgttttatatttcaagcttaatttta 283  Q
    |||||||||||||||||| ||| |||| | | || |||||||| |||||||| || |||| |||||||||   |||||||  | ||||||  ||||||||    
T  26645104 tttaacattgaggtgataagtctaaaagttcttacgacatcaaacatgattacttgcacatattttcttccttttgtttttgaattcaagtctaatttta 26645005  T
Q  284 caaataaatatttcatcaa 302  Q
    |  ||||||||||||||||    
T  26645004 ccgataaatatttcatcaa 26644986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 40549407 - 40549351
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    ||||||||||||||||||||| |||||||||||||||| |||| ||||  |||||||    
T  40549407 taattttacaaataaatattttatcaacaatattataagtcaagtaatcgatcaatt 40549351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 48685831 - 48685765
Alignment:
Q  276 taattttacaaataaatatttcatcaac-aatattataaatcaattaattaatcaattctatttcaa 341  Q
    ||||||||||||||||||||| |||||| |||||||||||| || |||| |||||||| | ||||||    
T  48685831 taattttacaaataaatatttaatcaacaaatattataaataaaataatcaatcaattttgtttcaa 48685765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 14352265 - 14352329
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttca 340  Q
    |||||||||| ||||||||||||||| ||||||||| |||||| ||||  ||| ||| |||||||    
T  14352265 taattttacagataaatatttcatcagcaatattattaatcaagtaatctatcgattttatttca 14352329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 285
Target Start/End: Original strand, 23441478 - 23441634
Alignment:
Q  129 aatatttacactatcacccacttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatca 228  Q
    ||||| ||||| || | ||| |||||||  ||||||||| ||| || ||||| || | |||||||||||| || ||  |||||||||  || ||||||||    
T  23441478 aatatatacacgattatccatttttcagtcaactttgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaat--gtttgacatca 23441575  T
Q  229 agcatgattagttacacacattttcttc--ttgttttatatttcaagcttaattttaca 285  Q
    | |||||||| |||| || |||||||||  |||||||  | ||||| ||||||||||||    
T  23441576 aacatgattacttacgcatattttcttcctttgtttttgaattcaatcttaattttaca 23441634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 22097185 - 22097248
Alignment:
Q  249 ttttcttcttgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattata 312  Q
    ||||||||||| |||  | ||||||  |||||||| | ||||||||||||||||||||||||||    
T  22097185 ttttcttcttggttttgaattcaagactaattttaaagataaatatttcatcaacaatattata 22097248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 346
Target Start/End: Complemental strand, 24274125 - 24274023
Alignment:
Q  245 cacattttcttcttgttttatatttcaagct-taattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaagt 343  Q
    |||||||||||||||||||  | |||||  | |||||||||| |||||||||||||||   |||||||||||| | |||   ||||||| |||||||| |    
T  24274125 cacattttcttcttgtttttgaattcaaagtataattttacagataaatatttcatcattgatattataaatccaataaacgatcaattttatttcaaat 24274026  T
Q  344 caa 346  Q
    |||    
T  24274025 caa 24274023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 7555718 - 7555791
Alignment:
Q  268 ttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaa 341  Q
    ||||||| |||||| |||  ||||||  ||||||| ||||||||||||||| ||||| || |||| ||||||||    
T  7555718 ttcaagcctaatttcacatgtaaataaatcatcaataatattataaatcaagtaattgattaattttatttcaa 7555791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 35292871 - 35292979
Alignment:
Q  150 ttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacat 249  Q
    |||||||  ||||||||| ||| |||||||| |||  |||| |||||||||| || || ||||| ||  | ||||||||| ||||||||   || |||||    
T  35292871 ttttcagtcaactttgttaaaaagtgtttatggacaatttagcattgaggtggtaagttcaaaagtgtttttgacatcaaacatgattacgcactcacat 35292970  T
Q  250 tttcttctt 258  Q
    |||||||||    
T  35292971 tttcttctt 35292979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 323
Target Start/End: Original strand, 34595915 - 34596067
Alignment:
Q  174 tgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttcttcttgttttatat---ttc 270  Q
    ||||||| |||| ||||||||| || || ||||||||||| ||  |||||||||||  ||||||| ||| ||||||||||||||| || | | |   |||    
T  34595915 tgtttatagaccatttaacattaagatggtaggtccaaaagtgtttatgacatcaaatatgattacttatacacattttcttcttcttatttttgaattc 34596014  T
Q  271 aagcttaattttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
    ||||||||||||| | |||||||||| |||||||| |||||||||||| ||||    
T  34596015 aagcttaattttaaagataaatatttgatcaacaacattataaatcaagtaat 34596067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 38362681 - 38362608
Alignment:
Q  275 ttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaagtcaaaa 348  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||    
T  38362681 ttaattttacaaattaatatttcatcaacaatattataaatcaattaatcaatcaattttgtttcaaatcaaaa 38362608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 348
Target Start/End: Complemental strand, 38582386 - 38582222
Alignment:
Q  187 tttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacattttc---ttcttgttttatatttcaagcttaatttta 283  Q
    |||||| ||||| | |||||||||||||||  ||||||||| | |||||||| ||| ||||||||||   ||||||||||  | ||||||| ||||||||    
T  38582386 tttaacgttgagattataggtccaaaaatgtttatgacatctaacatgattacttagacacattttctttttcttgtttttgaattcaagcctaatttta 38582287  T
Q  284 caaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaagtcaaaa 348  Q
     | |||||||||| || ||||||||||||||| || ||||  ||| ||| | |||||| ||||||    
T  38582286 aagataaatattttataaacaatattataaattaagtaatcgatcgattttgtttcaaatcaaaa 38582222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 347
Target Start/End: Complemental strand, 3839462 - 3839264
Alignment:
Q  150 ttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacat 249  Q
    |||| ||| ||||| ||| ||| |||| |||  ||| |||||||||| |||| || |||||||| ||| ||| ||| ||| ||| |||| |||||||| |    
T  3839462 tttttagccaacttcgttaaaaggtgtctatgaaccatttaacattggggtggtaagtccaaaagtgcttataacaccaaacataattacttacacacgt 3839363  T
Q  250 tttcttcttgttttat-atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaagtcaaa 347  Q
    |||||||||||| | | |  || ||| |||||||||| | ||||||||||||||||| ||||||||||||  |||  ||||||| | |||||| |||||    
T  3839362 tttcttcttgttgtttgaagtcgagcctaattttacagaaaaatatttcatcaacaacattataaatcaagcaatcgatcaattttgtttcaaatcaaa 3839264  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 46435630 - 46435702
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaattctatttcaagtcaaaa 348  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||| | |||||| ||||||    
T  46435630 taattttagaaataaatatttcatcaacaatattataaatcaaataaatgatcaattttgtttcaaatcaaaa 46435702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 32450282 - 32450339
Alignment:
Q  275 ttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||| |||||||    
T  32450282 ttaattttacacacaaatatttcatcaacaatattataaataaattaattgatcaatt 32450339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 41947066 - 41947019
Alignment:
Q  268 ttcaagcttaattttacaaataaatatttcatcaacaatattataaat 315  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  41947066 ttcaagcttaattttataaataaatattccatcaacaatattataaat 41947019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 323
Target Start/End: Complemental strand, 47085149 - 47084946
Alignment:
Q  125 atagaatatttacactatcacccactttt-cagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatga 223  Q
    |||||||||||| ||| ||| ||| |||| |||| ||||| ||| ||| |||||| |  | | ||||||||| || || ||||| ||||||||  ||| |    
T  47085149 atagaatatttatactgtcatccattttttcagccaacttcgttaaaaagtgtttgtaaatcatttaacattaagatggtaggttcaaaaatgtttatta 47085050  T
Q  224 catcaagcatgattagttacacacattttcttcttgttttat----atttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaat 319  Q
    |||||| ||||  || |||  |||||||||||||| || | |    |||||| || || ||||||| |||||||||| |||||||||||||||||||||     
T  47085049 catcaaacatggatacttatgcacattttcttcttcttgtttttgaatttcaggcctagttttacatataaatatttgatcaacaatattataaatcaag 47084950  T
Q  320 taat 323  Q
    ||||    
T  47084949 taat 47084946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 44594350 - 44594406
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| |||  |||||||    
T  44594350 taattttacaaataaacatttcatcaacaatattataaattaataaatcgatcaatt 44594406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 315
Target Start/End: Original strand, 33407137 - 33407291
Alignment:
Q  159 aactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacacatt-ttcttct 257  Q
    ||||||||| |||  || |||| |||| ||||||||||| | | ||||| |||||  |  ||||||||||| |||||||| ||| |||  || |||||||    
T  33407137 aactttgttaaaaattgcttatggaccatttaacattgatgcgttaggttcaaaagggtttatgacatcaaacatgattacttagacattttcttcttct 33407236  T
Q  258 tgttttatatttcaagcttaattttacaaataaatatttcatcaacaatattataaat 315  Q
    ||||||  | ||||||  |||||||||   || |||||||||||||||||||||||||    
T  33407237 tgtttttgaattcaagtctaattttac---tatatatttcatcaacaatattataaat 33407291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 43230896 - 43230941
Alignment:
Q  278 attttacaaataaatatttcatcaacaatattataaatcaattaat 323  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||    
T  43230896 attttacagataaatatttcatcaacaacaatataaatcaattaat 43230941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 3371502 - 3371454
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaattaatt 324  Q
    |||||||| | ||||||||||||||||||| | ||||||||||||||||    
T  3371502 taattttatagataaatatttcatcaacaacaatataaatcaattaatt 3371454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 33589378 - 33589314
Alignment:
Q  268 ttcaagcttaattttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    ||||||| ||| |||||| |||||||||||||||||||| |||||||| |  ||||| |||||||    
T  33589378 ttcaagcataactttacagataaatatttcatcaacaatgttataaattaggtaattgatcaatt 33589314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 38314340 - 38314392
Alignment:
Q  280 tttacaaataaatatttcatcaacaatattataaatcaattaattaatcaatt 332  Q
    |||||| |||||||||||| |||||||||||||| |||| ||||| |||||||    
T  38314340 tttacacataaatatttcaccaacaatattataattcaaataattgatcaatt 38314392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 32438267 - 32438142
Alignment:
Q  219 tatgacatcaagcatgattagttacacacattttcttcttgttttatat---ttcaagcttaattttacaaataaatatttcatcaacaatattataaat 315  Q
    ||||||||||| ||| |||| | |||||||||||| ||||||| | | |   ||||||  |||||||||| ||||||||||||| ||| |   |||||||    
T  32438267 tatgacatcaaacattattactcacacacattttcatcttgttgtttttgaattcaagtctaattttacagataaatatttcattaactacggtataaat 32438168  T
Q  316 caattaattaatcaattctatttcaa 341  Q
    ||| |||| |||||||| | ||||||    
T  32438167 caagtaatcaatcaattttgtttcaa 32438142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 43891453 - 43891495
Alignment:
Q  276 taattttacaaataaatatttcatcaacaatattataaatcaa 318  Q
    ||||||||||||||||||||||||||||  | |||||||||||    
T  43891453 taattttacaaataaatatttcatcaacggtgttataaatcaa 43891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 9003630 - 9003585
Alignment:
Q  296 tcatcaacaatattataaatcaattaattaatcaattctatttcaa 341  Q
    ||||||| ||||||||||||||| ||||| ||||||| ||||||||    
T  9003630 tcatcaataatattataaatcaagtaattgatcaattttatttcaa 9003585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 296
Target Start/End: Original strand, 508074 - 508223
Alignment:
Q  149 cttttcagcaaactttgttcaaatgtgtttatcgaccctttaacattgaggtgataggtccaaaaatgcgtatgacatcaagcatgattagttacacaca 248  Q
    ||||||||| ||||| ||| ||| |||||||| |||| |||||| || || || ||||||||||||||  ||||||||||| |||||||| ||| |||||    
T  508074 cttttcagccaacttcgttaaaaagtgtttatagaccatttaacgttaagatggtaggtccaaaaatgtttatgacatcaaacatgattacttatacaca 508173  T
Q  249 -ttttcttcttgttttat-atttcaagcttaattttacaaataaatattt 296  Q
     |||| ||| |||||| | ||||||||  |||||||||| ||||| ||||    
T  508174 ttttttttcctgttttttaatttcaagtctaattttacatataaacattt 508223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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