View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18955_low_10 (Length: 367)
Name: NF18955_low_10
Description: NF18955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18955_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 41635855 - 41636209
Alignment:
| Q |
1 |
cctttcatttaagcaaatagtgcccttgtttctaatctcatgtggttcacaaacgaatctgttaactatttaaaagcgtcaatattccacaaaacttgtt |
100 |
Q |
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| T |
41635855 |
cctttcatttaagcaaatagtgcccttgtttctaatctcatgtggttcacaaacgaatctgttaactatttaaaagcgccaatattccacaaaacttgtt |
41635954 |
T |
|
| Q |
101 |
ttcttgacattaaaaatgtgcatatatttatgacagacgattataacttagcatggttct---ttcgtatatgatattttcattttctctccctttatat |
197 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41635955 |
ttcttgacattaaaaatgtgcatatattcatggcagacgattataacttagcatggttcttctttcgtatatgatattttcattttctctccctttatat |
41636054 |
T |
|
| Q |
198 |
ctgatgaagtgatttctattcgtgtgttcatttatataacttgcattcattctctacttacttaggttatatgcacacacactcatgcaaattttactgg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41636055 |
ctgatgaagtgatttctattcgtgtgttcatttatataacttgcattcattctctacttacttaggttatatgcacacacactcatgcaaattttactgg |
41636154 |
T |
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| Q |
298 |
cactcaaaccttttcaaatcacctatatatttataatgatcttttgctaaaccat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41636155 |
cactcaaaccttttcaaatcacctatatatttataatgatcttttgctaaaccat |
41636209 |
T |
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