View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18955_low_11 (Length: 358)
Name: NF18955_low_11
Description: NF18955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18955_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 6388533 - 6388183
Alignment:
| Q |
1 |
ccatctcttggcgcccgaacaaaccaggaaactagactacgaaaatacataatctccccattcaatcctcagtataggtgatgaccctttacatagtcac |
100 |
Q |
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| T |
6388533 |
ccatctcttggcgcccgaacaaaccaggaaactagactacgaaaatacataatctccccattcaatcctcagtataggtgatgactctttacatagtcac |
6388434 |
T |
|
| Q |
101 |
aatataacataactcttgtgaatattgtgtctgcatcttctcaacttttcatgtataacttattacaggctttgggagttgttactgattgttctagtca |
200 |
Q |
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| T |
6388433 |
aatataacataactcttgtgaatattgtgtctgcatcttctcaacttttcatgtataacttattacaggctttgggagttgttactgattgttctagtca |
6388334 |
T |
|
| Q |
201 |
tatactcagcttggatatgcccctttgagtttgcctttctgacgtataagcaaaatggactattcatcatagacaacattgtcaatggcttcttcgccat |
300 |
Q |
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| T |
6388333 |
tatactcagcttggatatgcccctttgagtttgcctttctgacgtataagcaaaatggactattcatcatagacaacattgtcaatggcttcttcgccat |
6388234 |
T |
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| Q |
301 |
cgacatcgtgcttacattcttcgttgcataccacgatagtcattcttctct |
351 |
Q |
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| T |
6388233 |
cgacatcgtgcttacattcttcgttgcataccacgatagtcattcttctct |
6388183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 18171824 - 18171753
Alignment:
| Q |
259 |
actattcatcatagacaacattgtcaatggcttcttcgccatcgacatcgtgcttacattcttcgttgcata |
330 |
Q |
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||||||||||||||| |||||||| ||||| ||||| || || ||||| ||| | |||||||| |||||||| |
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| T |
18171824 |
actattcatcatagataacattgtgaatggtttctttgcaattgacatagtgatgacattctttgttgcata |
18171753 |
T |
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