View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18955_low_12 (Length: 311)
Name: NF18955_low_12
Description: NF18955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18955_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 14629110 - 14629289
Alignment:
| Q |
1 |
cacgggtggaatttggccttcaaaaaatttcaaaatggaaaattttatatggccacaaaattccttattcattaggctccttccactta--caagaggtg |
98 |
Q |
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| T |
14629110 |
cacgggtgaaatttggccttcaaaaaatttcaaaatggaaaattttatatggccacaaaattccttattcattaggctccttccacttaaacaagaggtg |
14629209 |
T |
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| Q |
99 |
atcatacttttcagcatttaatttgcggacatgacattttctaatttgaaaagcaaaacaaaatcaatagcataatctga |
178 |
Q |
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| T |
14629210 |
atcatacttttcagcatttaatttgcggacatgacattttctaatttgaaaagcaaaacaaaatcaatagcataatctga |
14629289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 14629380 - 14629487
Alignment:
| Q |
188 |
aaagaagcatgtcacaagtcaacaacatcataccaacccaaatgggttgaaaactatttaaaagataatatgagac---atcaatatcaataaatatcaa |
284 |
Q |
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| T |
14629380 |
aaagaagcacatcacaagtcaacaacatcataccaacccaagtgggttggaaactatttaaaagataatatgagacatgatcaatattaataaatatcaa |
14629479 |
T |
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| Q |
285 |
aatctaga |
292 |
Q |
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|||||||| |
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| T |
14629480 |
aatctaga |
14629487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 14637095 - 14637197
Alignment:
| Q |
188 |
aaagaagcatgtcacaagtcaacaacatcataccaacccaaatgggttgaaaactatttaaaagataatatgagac---atcaatatcaataaatatcaa |
284 |
Q |
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| T |
14637095 |
aaagaagcacgtcacacgtcaacaacatcagaccaacccaagtgggtcgaaaactatttaaaagataatttaagacatgatcaatatcaatacatatcaa |
14637194 |
T |
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| Q |
285 |
aat |
287 |
Q |
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||| |
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| T |
14637195 |
aat |
14637197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 12889148 - 12889236
Alignment:
| Q |
204 |
agtcaacaacatcataccaacccaaatgggttgaaaactatttaaaagataatatgagac---atcaatatcaataaatatcaaaatcta |
290 |
Q |
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| T |
12889148 |
agtcaacaacatcataccaacccaaatggattggcaactatttaaaagataat-tgagacatgatcattatcaataaatatcaaaatcta |
12889236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 14629590 - 14629655
Alignment:
| Q |
230 |
tgggttgaaaactatttaaaagataatatgagacat---caatatcaataaatatcaaaatctaga |
292 |
Q |
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| T |
14629590 |
tgggttggaaactatttaaaagataatgtgagacatgatcaatatcaataaatatcaaaatctaga |
14629655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 14636903 - 14636941
Alignment:
| Q |
5 |
ggtggaatttggccttcaaaaaatttcaaaatggaaaat |
43 |
Q |
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| T |
14636903 |
ggtggaatttggccttcaaaaaatttcaaaatgggaaat |
14636941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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