View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18955_low_14 (Length: 239)
Name: NF18955_low_14
Description: NF18955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18955_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25952104 - 25951883
Alignment:
| Q |
1 |
tcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataactcttgaatttcccaacatcaactgatccctcctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25952104 |
tcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataactcttgaatttcccaacatcaactgatccctcctg |
25952005 |
T |
|
| Q |
101 |
acctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaacaaaatttaccggtttagtaaggttttgtttc |
200 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25952004 |
acctagaccctgctcctgtttattgtcatcatatttatcctcattaggcatgaaaattccggtggaaacaaaatttaccggtttagtaaggtcctgtttc |
25951905 |
T |
|
| Q |
201 |
ttcgaggaatcgctgtgttttc |
222 |
Q |
| |
|
||| |||||||||||||||||| |
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|
| T |
25951904 |
ttcaaggaatcgctgtgttttc |
25951883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25945508 - 25945287
Alignment:
| Q |
1 |
tcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttataactcttgaatttcccaacatcaactgatccctcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||| |||| || |
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| T |
25945508 |
tcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgttgtaattctccaatttcccaacatccactgattcctcgtg |
25945409 |
T |
|
| Q |
101 |
acctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaacaaaatttaccggtttagtaaggttttgtttc |
200 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| || |
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| T |
25945408 |
acctagactctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggttgaaacaaaattcaccggtttagtgaggtcttgtatc |
25945309 |
T |
|
| Q |
201 |
ttcgaggaatcgctgtgttttc |
222 |
Q |
| |
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||||||||||| |||||||| |
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| T |
25945308 |
ctcgaggaatcgtcgtgttttc |
25945287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 25951696 - 25951577
Alignment:
| Q |
103 |
ctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaacaaaatttaccggtttagtaaggttttgtttctt |
202 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||||||||| |
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| T |
25951696 |
ctagaccctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatttacatgtttagtaaggtcttgtttctt |
25951597 |
T |
|
| Q |
203 |
cgaggaatcgctgtgttttc |
222 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
25951596 |
cgaggaatcgctgtgttttc |
25951577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 25951842 - 25951730
Alignment:
| Q |
110 |
ctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaaacaaaatttaccggtttagtaaggttttgtttcttcgaggaa |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||| |
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|
| T |
25951842 |
ctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatttacatgtttagtaaggtcttgtttcttcgaggaa |
25951743 |
T |
|
| Q |
210 |
tcgctgtgttttc |
222 |
Q |
| |
|
||||||||||||| |
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| T |
25951742 |
tcgctgtgttttc |
25951730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 25951543 - 25951415
Alignment:
| Q |
103 |
ctagaccctgctcctgtttattgtcatcaaatttatcctcattaggcatgaaagttccggtggaa---------acaaaatttaccggtttagtaaggtt |
193 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||| |
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| T |
25951543 |
ctagaccctgctcctgcttattgtcatcaaatttatcctcattaggcatgaaagttccggtagaaacgaaatttaccaaatttaccggttcagtaaggtc |
25951444 |
T |
|
| Q |
194 |
ttgtttcttcgaggaatcgctgtgttttc |
222 |
Q |
| |
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||||||||||||||||| ||||||||||| |
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| T |
25951443 |
ttgtttcttcgaggaatggctgtgttttc |
25951415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2661373 - 2661261
Alignment:
| Q |
1 |
tcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgt---tataactcttgaatttcccaacatcaactgatccctc |
97 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| | |||||||||||| ||||| | ||| ||||| ||||||||||||||| || || ||||| |
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| T |
2661373 |
tcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattccctttgtatgactctcgaatttcccaacatccacagacccctc |
2661274 |
T |
|
| Q |
98 |
ctgacctagaccc |
110 |
Q |
| |
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|||||||| |||| |
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|
| T |
2661273 |
ctgacctaaaccc |
2661261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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