View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18955_low_8 (Length: 380)
Name: NF18955_low_8
Description: NF18955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18955_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 140 - 363
Target Start/End: Complemental strand, 3082163 - 3081940
Alignment:
| Q |
140 |
gagcaattctatgaagaagaaagtttttgatgcgtcaatcttgaggatgtttagaagatcattcagatgagaagtatgtatgaggagactatattcaata |
239 |
Q |
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| T |
3082163 |
gagcaattctctgatgaagaaagtttttgatgcgtcaatcttgaggatgtttagaagatcattcggatgagaagtatgtatgaggagactatattcaata |
3082064 |
T |
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| Q |
240 |
aaacttcaagtttgaccataaaatccgcacattggttcttttctttaagagtgtggtaaataatgatattactttgcttaatcaaatttttattcttgaa |
339 |
Q |
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| T |
3082063 |
aaacttcaagcttgaccataaaatctgcacattgattcttttctttaagagtgtggtaaataatgatattactttgcttaatcaaatttttattcttgaa |
3081964 |
T |
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| Q |
340 |
acaaaacaacgtaaacatggaact |
363 |
Q |
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| T |
3081963 |
acaaaacaatgtaaacatggaact |
3081940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 3082287 - 3082221
Alignment:
| Q |
10 |
attatactgagactaaaataaacaacaatgatcatcaactataaaaatgtattggtaaggatttttt |
76 |
Q |
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| T |
3082287 |
attatactgagactaaaacaaacaacaatgatcatcaactataaaaatgtattggtaaggatttttt |
3082221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 43797869 - 43797962
Alignment:
| Q |
232 |
attcaataaaacttcaagtttgaccataaaatccgcacattggttcttttctttaagagtgtggtaaataatgatattactttgcttaatcaaa |
325 |
Q |
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| T |
43797869 |
attcaataaagcttcaagtttgcctataaaatccgcacacttgttttcttcccaaaaagtgtggcaaatagtgatattgttttgctcaatcaaa |
43797962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 39407711 - 39407631
Alignment:
| Q |
246 |
caagtttgaccataaaatccgcacattggttcttttctttaagagtgtggtaaataatgatattactttgcttaatcaaat |
326 |
Q |
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|||| ||| |||| |||||||||||||| || ||| |||||||||||||||| ||||| |||| |||||| ||||||| |
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| T |
39407711 |
caagcttggccatgaaatccgcacattgattaccttccttaagagtgtggtaaacaatgacattattttgctccatcaaat |
39407631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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