View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18956_high_4 (Length: 365)

Name: NF18956_high_4
Description: NF18956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18956_high_4
NF18956_high_4
[»] chr3 (7 HSPs)
chr3 (8-314)||(52653769-52654079)
chr3 (8-314)||(33709825-33710133)
chr3 (15-273)||(40574172-40574428)
chr3 (15-83)||(16729781-16729849)
chr3 (193-297)||(16729868-16729975)
chr3 (201-238)||(23686176-23686213)
chr3 (201-238)||(24058413-24058450)
[»] chr8 (5 HSPs)
chr8 (8-314)||(12729386-12729687)
chr8 (20-314)||(44729086-44729387)
chr8 (156-317)||(28695925-28696091)
chr8 (11-112)||(14546294-14546396)
chr8 (20-101)||(28696113-28696195)
[»] chr4 (10 HSPs)
chr4 (8-175)||(24391830-24391997)
chr4 (15-270)||(48779718-48779974)
chr4 (11-273)||(20251408-20251671)
chr4 (11-210)||(47077960-47078154)
chr4 (11-81)||(24129391-24129461)
chr4 (227-315)||(3415594-3415685)
chr4 (11-119)||(27538101-27538211)
chr4 (159-255)||(24129202-24129298)
chr4 (227-309)||(3425142-3425227)
chr4 (227-318)||(18736827-18736921)
[»] chr1 (14 HSPs)
chr1 (8-314)||(49061369-49061678)
chr1 (8-273)||(49053789-49054055)
chr1 (15-101)||(52282039-52282128)
chr1 (11-93)||(50059492-50059575)
chr1 (227-319)||(21432107-21432202)
chr1 (11-97)||(17458409-17458496)
chr1 (11-155)||(42263402-42263548)
chr1 (227-314)||(35624689-35624779)
chr1 (25-83)||(12634497-12634555)
chr1 (227-315)||(29681263-29681353)
chr1 (227-314)||(44524460-44524550)
chr1 (182-244)||(31286103-31286164)
chr1 (229-304)||(43358433-43358511)
chr1 (227-302)||(48366493-48366570)
[»] chr5 (8 HSPs)
chr5 (11-314)||(9851256-9851561)
chr5 (8-273)||(29006480-29006746)
chr5 (227-316)||(2022629-2022721)
chr5 (162-310)||(36203207-36203357)
chr5 (160-255)||(15205481-15205576)
chr5 (26-273)||(9080508-9080755)
chr5 (11-82)||(15205363-15205434)
chr5 (8-134)||(36203087-36203214)
[»] chr7 (8 HSPs)
chr7 (21-314)||(12239434-12239731)
chr7 (193-315)||(37469058-37469183)
chr7 (23-315)||(24870428-24870723)
chr7 (23-294)||(1840661-1840931)
chr7 (86-270)||(23757029-23757212)
chr7 (15-239)||(34091362-34091586)
chr7 (135-294)||(1820951-1821109)
chr7 (227-304)||(5436972-5437051)
[»] chr6 (3 HSPs)
chr6 (11-246)||(11931953-11932188)
chr6 (8-289)||(28611985-28612267)
chr6 (264-314)||(24075619-24075669)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-273)||(217757-217999)
[»] chr2 (3 HSPs)
chr2 (11-273)||(14218742-14219004)
chr2 (21-112)||(34681118-34681211)
chr2 (44-123)||(38327394-38327475)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 52653769 - 52654079
Alignment:
Q  8 attatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgc 106  Q
    ||||||||||| ||||||| ||||||||||||| | |||  ||||||||| ||||||||||||||||||| ||||||||||||  ||| ||||| |||||    
T  52653769 attatactaaatcattcttacttttctctagtgcacgaggaaaattgacagaactttattctgtaaactaccattgtcgatacacttgatgtgaatgtgc 52653868  T
Q  107 aagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaag 206  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||  || |||| ||||||||||    
T  52653869 aagtcacgtcaaggattccattgtatcctgaaggggattcgccggtataaccattttgcatccggttggcataactggtgagggcgaattgaacctaaag 52653968  T
Q  207 gttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgcagtagacccccaacac 303  Q
    ||||| |||||||||||||||||||||||||||||||||  ||| ||||| ||||||||||||   |||||||||||||||||| | | ||||| |||||    
T  52653969 gttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcattttcatcatcttcttgatcaagttattgccgcaaaccccaaacac 52654068  T
Q  304 aggttctaaca 314  Q
    |||||||||||    
T  52654069 aggttctaaca 52654079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 33709825 - 33710133
Alignment:
Q  8 attatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgc 106  Q
    ||||||||||| ||||||||||||||||||||| |  |||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  33709825 attatactaaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaactaccattgtcgatacgcttggtgtgaatgtgc 33709924  T
Q  107 aagtcacaccaaggattccattgtatcctgaaggggattcgccggtata-acccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaa 205  Q
    |||||||  ||||||||| || ||||||| ||||||||| ||||||||| ||||||||||||||| ||| | ||||||||||||||||||||| ||||||    
T  33709925 aagtcacgtcaaggattctatcgtatcctaaaggggattagccggtatatacccttttgcatccggttgacataactggtggaggtgaatcgatcctaaa 33710024  T
Q  206 ggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcat--tttcatcatcttgatcaagttattgcagtagacccccaacac 303  Q
    |||||| |||||||||||||||||||||||||| ||||||  ||| ||||| || |  | ||||  ||||| ||||| |||||||| ||| |||||||||    
T  33710025 ggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttcttcatatcattttcttggtcaagatattgcagcaga-ccccaacac 33710122  T
Q  304 aggttctaaca 314  Q
    |||||||||||    
T  33710123 aggttctaaca 33710133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 40574428 - 40574172
Alignment:
Q  15 taaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtca 112  Q
    |||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| | |||||| || ||||| ||||||||||||    
T  40574428 taaatcattctttcttttctctagtgcacgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtca 40574329  T
Q  113 caccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagc 212  Q
    |  ||| |||||||| ||||||||||||  |||||| | |||  || |||||||||| |||  | | |||||||| |||||||| | | ||||||||||     
T  40574328 cgtcaaagattccatagtatcctgaaggtaattcgctgatat-gccattttgcatccaattaacattactggtgggggtgaatcaagcttaaaggttagt 40574230  T
Q  213 gtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 273  Q
    |||||||||| || |||  ||||||||||||||   |||||||| ||||||||||||||||    
T  40574229 gtgtcccacatacacttcagaatttatgtgcac---tcttcatgttcattttcatcatctt 40574172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 16729781 - 16729849
Alignment:
Q  15 taaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg 83  Q
    |||| ||||||||||||| | ||||| | ||   ||||||||||||||||||| |||||||||||||||    
T  16729781 taaatcattctttcttttatttagtgcacgaagaaaattgacataactttattttgtaaactatcattg 16729849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 16729868 - 16729975
Alignment:
Q  193 aatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt---gatcaagttattgcag 289  Q
    ||||||||||| |||||   | ||| ||||||||||||| |||| ||||||||  ||  ||||| |||| |||||| ||||   ||||||||||||||||    
T  16729868 aatcgaacctagaggttgatgagtctcacacacgctttgaaattaatgtgcacactttatcatgttcatcttcatcttcttattgatcaagttattgcag 16729967  T
Q  290 tagacccc 297  Q
     |||||||    
T  16729968 cagacccc 16729975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 23686176 - 23686213
Alignment:
Q  201 ctaaaggttagcgtgtcccacacacgctttggaattta 238  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  23686176 ctaaaggttagcgtgtcccacacacggtttcgaattta 23686213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 24058413 - 24058450
Alignment:
Q  201 ctaaaggttagcgtgtcccacacacgctttggaattta 238  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  24058413 ctaaaggttagcgtgtcccacacacggtttcgaattta 24058450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 12729386 - 12729687
Alignment:
Q  8 attatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgc 106  Q
    |||||||||||  |||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||  |||||||||| | ||||||||| |||||    
T  12729386 attatactaaataattctttcttttctctagtgcacgagagaaattgacagaactttattcagtaaactacaattgtcgatatgcttggtgtgaatgtgc 12729485  T
Q  107 aagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaag 206  Q
    ||||||   |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||    
T  12729486 aagtcatgtcaaggatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatccggttggcataactggtggaggcgaatcgtacctaaag 12729585  T
Q  207 gttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatcttgatcaagttattgcagtagacccccaacacagg 306  Q
    ||||| ||||||||||||| |||||||||| ||||| |||||||      ||||| |||||| ||||||||||| |||||||| ||| ||||||||||||    
T  12729586 gttagtgtgtcccacacactctttggaattcatgtgtacttttc------atcatgttcatcttcttgatcaaggtattgcagcagatccccaacacagg 12729679  T
Q  307 ttctaaca 314  Q
    ||||||||    
T  12729680 ttctaaca 12729687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 44729086 - 44729387
Alignment:
Q  20 cattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtcacacca 117  Q
    ||||||||| |||| |||||| | |||||| |||||||  |||  ||||||||||||||||||| |||||||| ||||| ||| ||||||||||||  ||    
T  44729086 cattctttcatttccctagtgcacgagagagattgaca--actacattctgtaaactatcattgatcgatacgcttggtatgaatgtgcaagtcacgtca 44729183  T
Q  118 aggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtc 217  Q
    ||||||||| |||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||| |  | ||||||| |||| |||||||||| || ||    
T  44729184 aggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatc 44729283  T
Q  218 ccacacacgctttggaatttatgtgcacttttc----ttcatgatcattttc---atcatcttgatcaagttattgcagtagacccccaacacaggttct 310  Q
    ||||||||||||||||||||||||||||| |||    |||||| ||||||||   ||| ||||||||||||||||| || | || | |||||||| ||||    
T  44729284 ccacacacgctttggaatttatgtgcactcttcatcattcatgttcattttcattatcttcttgatcaagttattgtagcaaactctcaacacagattct 44729383  T
Q  311 aaca 314  Q
    ||||    
T  44729384 aaca 44729387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 317
Target Start/End: Complemental strand, 28696091 - 28695925
Alignment:
Q  156 acccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcat 255  Q
    ||||||||||||| | ||| | |||||||||  || ||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| | ||| ||||    
T  28696091 acccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcatcat 28695992  T
Q  256 gatcattttcatca---tcttgatcaagttattgcagtaga--cccccaacacaggttctaacaaaa 317  Q
    | |||| |||||||   ||||| |||||||||||||  | |  |||||||||||| |||||||||||    
T  28695991 gttcatattcatcatcttcttggtcaagttattgcaacaaacccccccaacacagattctaacaaaa 28695925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 14546396 - 14546294
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaa 108  Q
    |||||||| |||||||||||||||||| || || ||||||||||||||||||||| | |||||| || ||||| |||||| |||||||||| ||||||||    
T  14546396 atactaaatcattctttcttttctctaatgaatcagagaaattgacataactttagtatgtaaagtaccattgatcgata-gtttggtgtgaatgtgcaa 14546298  T
Q  109 gtca 112  Q
    ||||    
T  14546297 gtca 14546294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 28696195 - 28696113
Alignment:
Q  20 cattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga 101  Q
    |||||||||||||||| || | | |||  ||||||||| ||||||||||| |||| |||||||| || ||||| |||||||||    
T  28696195 cattctttcttttctccagggcacgaggaaaattgacagaactttattctataaattatcattgatcaatacgcttggtgtga 28696113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 24391830 - 24391997
Alignment:
Q  8 attatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtgatgtgca 107  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391830 attatactaaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtgatgtgca 24391929  T
Q  108 agtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattgg 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  24391930 agtcacaccaaggattccattgtatcttgaaggggattcgccggtataacccttttgcatccggttgg 24391997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 48779974 - 48779718
Alignment:
Q  15 taaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtca 112  Q
    |||| ||||| || |||||||||||| | || | ||| ||||||||||||||||| ||||||||||||| | |||| | ||||||||| |||||||||||    
T  48779974 taaatcattcattattttctctagtgcacgacataaactgacataactttattctctaaactatcattgattgatatgcttggtgtgaatgtgcaagtca 48779875  T
Q  113 caccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagc 212  Q
    |  ||| |||| ||| |||||||||||||||||| ||| |||| ||||||||||||| |||||| |||||||  |||| ||||||||| ||||||||||     
T  48779874 cgtcaatgatttcatagtatcctgaaggggattcaccgatata-cccttttgcatccaattggcataactggcagaggcgaatcgaacataaaggttagt 48779776  T
Q  213 gtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcat 270  Q
    || |||||||||||||||| ||||||| |||||  ||| ||||| |||| || |||||    
T  48779775 gtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctttatcat 48779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 20251408 - 20251671
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaa 108  Q
    |||||||| |||| |||||||||| ||||| | |||||||||||||| ||||||||| ||||||||||||||| |||||||  ||| |||| |||| |||    
T  20251408 atactaaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaa 20251507  T
Q  109 gtcacaccaaggattccattgtatcctgaa-ggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaagg 207  Q
    | |||| ||| ||||| ||  ||||||||| |||||||| || |||| |||| |||||||||| ||| | | ||| || | ||  ||| ||| |||||      
T  20251508 ggcacatcaatgattcaatcatatcctgaagggggattcaccagtat-acccctttgcatccggttgacattactagtaggggcaaatggaatctaaata 20251606  T
Q  208 ttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 273  Q
    |||| |||| | |||||||||||| |||||||||| ||| ||| ||||| |||| |||||||||||    
T  20251607 ttagtgtgt-ctacacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcatctt 20251671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 47078154 - 47077960
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaag 109  Q
    |||||||| ||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||| |||||   || |||||||||| | |||| |||    
T  47078154 atactaaatcattctttcttttttgtagtgtacgagagaaattgacagaactttattctgtaaactaacattg---at-cgtttggtgtaaatgtgtaag 47078059  T
Q  110 tcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtt 209  Q
    ||||  |||||||||||| ||||||| ||||||||| | |   |  ||||||||||||||||||| | ||| |||||| |  |||| ||| |||||||||    
T  47078058 tcacgtcaaggattccatggtatcctaaaggggatttgtc--aaatacccttttgcatccgattgacataattggtggggaagaatagaatctaaaggtt 47077961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 24129461 - 24129391
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcat 81  Q
    |||||||| | ||||||||||||||||||| | |  ||||||||||||||||||||| |||||||||||||    
T  24129461 atactaaatctttctttcttttctctagtgcacggaagaaattgacataactttattatgtaaactatcat 24129391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 3415594 - 3415685
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattttcatcatctt---gatcaagttattgcagtagacccccaacacaggttctaacaa 315  Q
    |||||||||||||||||||  ||| ||||| |||| |||||||||||   | |||||||||||||| |||||||||||||| |||| |||||    
T  3415594 ctttggaatttatgtgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttccaacaa 3415685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 27538211 - 27538101
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgt-gatgtgcaa 108  Q
    |||||||| ||||||||  |||||||| || || ||||||||||||||||||| |||||||||||  |||||| |||||| |||| || |  ||||||||    
T  27538211 atactaaatcattctttaatttctctaatgcataagagaaattgacataacttaattctgtaaacggtcattgatcgatatgtttagtataaatgtgcaa 27538112  T
Q  109 gtcacaccaag 119  Q
    |||||| ||||    
T  27538111 gtcacatcaag 27538101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 24129298 - 24129202
Alignment:
Q  159 cttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcat 255  Q
    ||||| |||| | ||||| |||||||||| || ||||| ||  ||||| |||  ||||||| |||| ||||||||||||||||||||||||| ||||    
T  24129298 cttttacatctggttggcataactggtgggggagaatcaaagttaaagattaatgtgtcccgcacatgctttggaatttatgtgcacttttcatcat 24129202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 3425142 - 3425227
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattttcatcatctt---gatcaagttattgcagtagacccccaacacaggttc 309  Q
    |||||||||||||||||||  ||  ||||| |||| |||||||||||   | |||||||||||||| ||| |||||||||||||||    
T  3425142 ctttggaatttatgtgcacactttatcatgttcatcttcatcatcttcttggtcaagttattgcagcagatccccaacacaggttc 3425227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 18736921 - 18736827
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattt---tcatcatcttgatcaagttattgcagtagacccccaacacaggttctaacaaaaa 318  Q
    |||||||||||||||||||  ||| ||| | |||| |   ||||| |||||| ||||||||| ||| ||||||||||||||  ||| ||||||||    
T  18736921 ctttggaatttatgtgcacacttcatcaagttcatcttaatcatcttcttgaccaagttattacagcagacccccaacacaaattccaacaaaaa 18736827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 49061369 - 49061678
Alignment:
Q  8 attatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgc 106  Q
    ||||||||||| ||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  49061369 attatactaaatcattctttcttttctctagtgcacgagggaaattgacaaaactttattctgtaaactaccattgtcgatatgtttggtgtgaatgtgc 49061468  T
Q  107 aagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaag 206  Q
    || ||||  ||||||||||||||||| |||||||||||||| ||||||||||||||||||||   ||||| |||||||||| || |||||||||||||||    
T  49061469 aaatcacgtcaaggattccattgtattctgaaggggattcgtcggtataacccttttgcatctagttggcataactggtgggggcgaatcgaacctaaag 49061568  T
Q  207 gttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatc---ttgatcaagttattgcagtagacccccaacac 303  Q
      ||| || ||||||||||||||| ||||||||||||||  ||| ||||| |||| ||| |||||   ||| | || ||||||||| ||| |||||||||    
T  49061569 actagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcatcttcttcatctttttggtaaaattattgcagcaga-ccccaacac 49061667  T
Q  304 aggttctaaca 314  Q
    | |||||||||    
T  49061668 aagttctaaca 49061678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 49053789 - 49054055
Alignment:
Q  8 attatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgc 106  Q
    ||||||||||| |||||||||| |||||||||| | ||| ||||||| || ||||||||| ||||||||| ||||||||||| | ||||||||| |||||    
T  49053789 attatactaaatcattctttctcttctctagtgcacgagggaaattggcagaactttattttgtaaactaccattgtcgatatgcttggtgtgaatgtgc 49053888  T
Q  107 aagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaag 206  Q
    |||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||||| || |||||||||||||||    
T  49053889 aagtcacgtcaaggatttcattgtatcctgaaggggattcgccggtataacccttttgcatccagttggtataactggtgggggcgaatcgaacctaaag 49053988  T
Q  207 gttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 273  Q
    ||||| || |||||||||||| |||||||||||||| ||  ||| ||||| |||| ||| |||||||    
T  49053989 gttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcatcttcttcatctt 49054055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 52282128 - 52282039
Alignment:
Q  15 taaaccattctttcttttctctagtgtatgagaga--aattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga 101  Q
    |||| ||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||| ||||| || |||||||||    
T  52282128 taaatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgtaaactaccattgatcgatgcgcttggtgtga 52282039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 50059492 - 50059575
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtt 93  Q
    ||||| || |||||||| |||||||||||| | |||||||||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  50059492 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgtt 50059575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 21432107 - 21432202
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattttcatcatctt---gatcaagttattgcagtagacccccaacacaggttctaacaaaaat 319  Q
    |||||||||||||||||||  |||  |||| |||| |||||||||||   | |||||||||||||| |||||||||||||| |||| |||||||||    
T  21432107 ctttggaatttatgtgcacacttcagcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttccaacaaaaat 21432202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 17458409 - 17458496
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggt 97  Q
    |||||||| ||||||||| ||||||||||| | ||||  ||| || ||||||||||| ||||||||||||||| |||||||| |||||    
T  17458409 atactaaatcattctttcatttctctagtgcacgagatgaatagagataactttattttgtaaactatcattgatcgatacgcttggt 17458496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 42263548 - 42263402
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaa 108  Q
    |||||| | ||||||||||||||||||||| | ||||||||| |||| |||||| || |||||| || ||||| |||||||| || || || ||||||||    
T  42263548 atactatatcattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaattaacattgttcgatacgcttagtatgaatgtgcaa 42263449  T
Q  109 gtcacaccaaggattccattgtatcctgaaggggattcgccggtata 155  Q
    ||||   ||| ||||  |  |||||||||||||||||| ||| ||||    
T  42263448 gtcatgtcaaagattttaaagtatcctgaaggggattcaccgttata 42263402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 35624779 - 35624689
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgcagtagacccccaacacaggttctaaca 314  Q
    |||||||||||||||||||  ||| | ||  |||| |||||||   ||||| |||||||||||||| |||||||||||||| |||||||||    
T  35624779 ctttggaatttatgtgcacacttcgtaatattcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttctaaca 35624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 12634497 - 12634555
Alignment:
Q  25 tttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg 83  Q
    |||||||||| ||||| || ||||||||||||| |||||||||||||||| || |||||    
T  12634497 tttcttttctttagtgcattagagaaattgacagaactttattctgtaaattaccattg 12634555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 315
Target Start/End: Complemental strand, 29681353 - 29681263
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgcagtagacccccaacacaggttctaacaa 315  Q
    ||||||||||||| |||||  ||| ||||| |||| |||||||   ||||| ||||||||||||| ||||||||||||||| |||| |||||    
T  29681353 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca-tagacccccaacacaagttccaacaa 29681263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 44524460 - 44524550
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattttcatcatctt---gatcaagttattgcagtagacccccaacacaggttctaaca 314  Q
    ||||||||||||||||||   ||| ||||| |||| |||||||||||   |||||||||||||||  |||||||||| ||| |||| ||||    
T  44524460 ctttggaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttattgcaacagacccccaatacaagttccaaca 44524550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 31286103 - 31286164
Alignment:
Q  182 tggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgca 244  Q
    ||||||||||||||| ||||||||  |||||||||   |||||||||||| ||||||||||||    
T  31286103 tggtggaggtgaatcaaacctaaaatttagcgtgt-ttacacacgctttgaaatttatgtgca 31286164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 43358511 - 43358433
Alignment:
Q  229 ttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgcagtagacccccaacaca 304  Q
    |||||||| ||||||||  ||| ||||  |||| |||||||   |||||||||| ||||||||||||| ||||||||||    
T  43358511 ttggaattcatgtgcacgcttcatcatagtcatcttcatcatcttcttgatcaatttattgcagtagatccccaacaca 43358433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 48366493 - 48366570
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattttcatcatctt---gatcaagttattgcagtagacccccaaca 302  Q
    |||| |||||||| |||||  ||| ||||| |||| |||||||||||   ||||||||||||||| |||||||||||||    
T  48366493 ctttcgaatttatttgcacacttcatcatgttcatcttcatcatcttcttgatcaagttattgca-tagacccccaaca 48366570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 9851561 - 9851256
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaag 109  Q
    |||||||| || |||||||||||||||||| |  ||||||  ||||| ||||||||||||||||  | ||||||||||||| ||||||||| |||||||     
T  9851561 atactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgcaaa 9851462  T
Q  110 tcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtt 209  Q
    |||||  ||| ||||||| ||||| ||||||||||||||||||||| ||||||||||| || ||||| |||||||| | || |||| ||||||||| |||    
T  9851461 tcacattaagtattccatcgtatcttgaaggggattcgccggtata-cccttttgcattcggttggcttaactggtag-ggagaattgaacctaaatgtt 9851364  T
Q  210 agcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatc---ttgatcaagttattgcagtagacccccaacacagg 306  Q
    || |||||||||||||||||||||||||||||||||  ||| ||||| |||| |||||||||   |||||||||||||||||| ||||| || ||||| |    
T  9851363 agtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatg 9851264  T
Q  307 ttctaaca 314  Q
    ||||||||    
T  9851263 ttctaaca 9851256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 29006480 - 29006746
Alignment:
Q  8 attatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaa-ctatcattgtcgatacgtttggtgtga-tgtg 105  Q
    ||||||||||| ||||| ||||||| ||||||| | |||| || |||||| |||||||||||||||| ||| ||||| ||||||| ||||||||| ||||    
T  29006480 attatactaaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaaactaacattgacgatacgcttggtgtgaatgtg 29006579  T
Q  106 caagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaa 205  Q
     | ||||   ||||||||||||||||| |||||| |||||||||  ||||||||||||||||| | |||    |||| |||| || ||||||||||||||    
T  29006580 tatgtcatgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatctggttgataaaactagtgg-ggcgaatcgaacctaaa 29006678  T
Q  206 ggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 273  Q
     ||||| ||||| ||||||||||||| |||||||||||||| ||| ||||  |||| || ||||||||    
T  29006679 agttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatcatctt 29006746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 2022721 - 2022629
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattttcatcatctt---gatcaagttattgcagtagacccccaacacaggttctaacaaa 316  Q
    ||||| ||||||||||||| |||| ||||| |||| |||||||||||   |||||||||||||||| |||||||||||||| |||| ||||||    
T  2022721 ctttgaaatttatgtgcacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcagcagacccccaacacaagttccaacaaa 2022629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 310
Target Start/End: Original strand, 36203207 - 36203357
Alignment:
Q  162 ttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcat 261  Q
    ||||||||| ||||| |||||||||| |  ||||||||| |||||||||| ||| |||||||||||  || |||||||||||||  ||| | ||| ||||    
T  36203207 ttgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcacaattcattatgttcat 36203306  T
Q  262 tttcatca---tcttgatcaagttattgcagtagacccccaacacaggttct 310  Q
     |||||||   ||||||| |||||||| ||| ||| |||||||| |||||||    
T  36203307 cttcatcatcttcttgatgaagttattacagcaga-ccccaacataggttct 36203357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 15205481 - 15205576
Alignment:
Q  160 ttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcat 255  Q
    ||||||||||  | ||| |||||||||| |  ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||| ||| ||||    
T  15205481 ttttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcactcttcatcat 15205576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 273
Target Start/End: Complemental strand, 9080755 - 9080508
Alignment:
Q  26 ttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtcacaccaaggatt 123  Q
    ||||||||||||||  | ||||| |||||| | ||||||||| ||||||||| ||||| || ||||||||  |||| |||||||||| ||  |||| |||    
T  9080755 ttcttttctctagtacacgagagcaattgagagaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaatt 9080656  T
Q  124 ccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggc-gtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccaca 222  Q
    |||  ||||| |||||||| |||| |||||| || | ||||||||   ||| |   || |||||| || ||||||||| ||||| |||| ||||  ||||    
T  9080655 ccaaagtatcatgaagggg-ttcgtcggtat-actcatttgcatctacttgacaaaaattggtgggggcgaatcgaacttaaagcttagtgtgt-tcaca 9080559  T
Q  223 cacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 273  Q
    ||| ||||  ||||||||||| |||||  ||||| ||||||||||| ||||    
T  9080558 cactctttaaaatttatgtgccctttttatcatgttcattttcatcttctt 9080508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 15205363 - 15205434
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcatt 82  Q
    |||||||| |||| | |||||||| ||||| |  ||||||||| |||| |||||||||| ||||||||||||    
T  15205363 atactaaatcattgtatcttttctttagtgaacaagagaaattaacatgactttattctctaaactatcatt 15205434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 36203087 - 36203214
Alignment:
Q  8 attatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtg-atgtgc 106  Q
    |||||||||||  |||| |||| |||| ||||||| ||||||| ||| || ||||||||| ||||| ||| |||||  |||||  ||| |||| | ||||    
T  36203087 attatactaaattattcgttctcttctttagtgtacgagagaatttgtcagaactttattttgtaagctaccattgcagatacacttgatgtgaacgtgc 36203186  T
Q  107 aagtcacaccaaggattccattgtatcc 134  Q
    |||||||  ||||||||| |||| ||||    
T  36203187 aagtcacgtcaaggattctattgcatcc 36203214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 6e-62; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 21 - 314
Target Start/End: Complemental strand, 12239731 - 12239434
Alignment:
Q  21 attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaagtcacaccaag 119  Q
    |||||||||| |||||||| ||  ||| ||||||||| |||||||||||| |||||| ||||||||||||| ||||||||| ||||||||||||  ||||    
T  12239731 attctttcttatctctagtatactagataaattgacaaaactttattctggaaactaccattgtcgatacgcttggtgtgaatgtgcaagtcacgtcaag 12239632  T
Q  120 gattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattgg-cgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcc 218  Q
    |||| ||| ||||||||||||||||||||||  ||| |||||||||||||| || | | |||||||||| || |||||||||||||||||||  ||||||    
T  12239631 gatttcatcgtatcctgaaggggattcgccgacata-cccttttgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcc 12239533  T
Q  219 cacacacgctttggaatttatgtgcacttttcttca---tgatcattttcatcatcttgatcaagttattgcagtagacccccaacacaggttctaaca 314  Q
    ||||||||||||| |||||||||||||  ||| |||   | |||||  ||||| |||| ||||||||||||||| | ||| |||||||| |||||||||    
T  12239532 cacacacgctttgaaatttatgtgcacacttcatcatattcatcatcatcatcttcttaatcaagttattgcagcaaacctccaacacaagttctaaca 12239434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 193 - 315
Target Start/End: Original strand, 37469058 - 37469183
Alignment:
Q  193 aatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgcag 289  Q
    |||| |||||||||||||| ||||||||||||| ||||| ||||||||||||| |||  ||||| |||| |||||||   |||||||||||||||||| |    
T  37469058 aatcaaacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgctg 37469157  T
Q  290 tagacccccaacacaggttctaacaa 315  Q
     | |||||||||||||||||||||||    
T  37469158 caaacccccaacacaggttctaacaa 37469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 315
Target Start/End: Original strand, 24870428 - 24870723
Alignment:
Q  23 tctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtcacaccaagg 120  Q
    |||||||||||||||||| | |||| ||||||| | ||||||||| ||||||||||||||| || ||||| ||||||| | | || |||| ||  |||      
T  24870428 tctttcttttctctagtgcacgagaaaaattgatagaactttattatgtaaactatcattgatcaatacgcttggtgtaaatatgaaagtaacgtcaata 24870527  T
Q  121 attccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtccca 220  Q
    ||  ||| ||||||| | | ||||| |||   ||| |||||||||||||| ||||| |||||||| | || ||||||||| ||||||||||| |||||||    
T  24870528 atatcatagtatcctaatgtggatttgccac-ata-cccttttgcatccggttggcataactggtaggggcgaatcgaacttaaaggttagcatgtccca 24870625  T
Q  221 cacacgctttggaatttatgtgcacttttcttcatg---atcattttcatcatcttgatcaagttattgcagtagacccccaacacaggttctaacaa 315  Q
     ||| | | ||||||||||||| | | ||| |||||   ||| |  ||||| |||| ||||||||||||||| | |||||||||| ||||||||||||    
T  24870626 tacaagatgtggaatttatgtgtattattcatcatgtctatcttcatcatcttcttcatcaagttattgcagcaaacccccaacataggttctaacaa 24870723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 1840661 - 1840931
Alignment:
Q  23 tctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtgatg-tgcaagtcacaccaagg 120  Q
    ||||||||||||| | || |||||||||||||||| | ||||||| ||||||||||||||| ||||||  ||||||||||   |||||   ||  |||||    
T  1840661 tctttcttttctcaaatgcatgagagaaattgacagatctttattatgtaaactatcattgatcgatatatttggtgtgaacatgcaaa--acgtcaagg 1840758  T
Q  121 attccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtccca 220  Q
    ||||||   |||  |||||| |||| || |||||  || ||||||||||| ||||| | |||| |||||| ||||| ||  |||||||||| || | |||    
T  1840759 attccaaaatattttgaaggagatttgctggtatt-cctttttgcatccggttggcatcactgatggaggcgaatcaaatgtaaaggttagtgtattcca 1840857  T
Q  221 cacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatcttgatcaagttattgcagtagac 294  Q
    ||||| |||| || ||||||| |||||||| ||||| ||||  |||||  ||||||||||||||||||| ||||    
T  1840858 cacacactttagattttatgtccacttttcatcatgttcatcatcatctacttgatcaagttattgcagcagac 1840931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 270
Target Start/End: Complemental strand, 23757212 - 23757029
Alignment:
Q  86 gatacgtttggtgtga-tgtgcaagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactgg 184  Q
    |||||||||||||||| |||| | |||||  ||||| | ||||  |||| ||||||||||||||| ||||| |||||||||||| | || || ||| |||    
T  23757212 gatacgtttggtgtgaatgtgaatgtcacgtcaagggtcccatattatcttgaaggggattcgccagtata-cccttttgcatctggttagcttaattgg 23757114  T
Q  185 tggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcat 270  Q
    | | ||||||||||||||||| |||||  |||| |||| |  ||| ||||||||||| |||| ||| ||||| |||| ||||||||    
T  23757113 tag-ggtgaatcgaacctaaaagttagtatgtcacacataaacttcggaatttatgttcactcttcatcatgttcatcttcatcat 23757029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 34091586 - 34091362
Alignment:
Q  15 taaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcatt-gtcgatacgtttggtgtg-atgtgcaagtca 112  Q
    |||| ||||| |||||||||||| || |||||||||||||| | ||||||| | ||||||||| ||||  |  ||||| |||||||| ||||||||||||    
T  34091586 taaatcattcattcttttctctaatgcatgagagaaattgagagaactttactttgtaaactaccattaattcatacgattggtgtgaatgtgcaagtca 34091487  T
Q  113 caccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagc 212  Q
    |  ||||||||| ||  ||| || || || ||| ||| | || ||  ||||||| ||||||| | ||||||||||||||||||| ||| |||| |||||     
T  34091486 cgtcaaggattctataatattctaaaaggaattggccag-at-acttttttgcaaccgattgacataactggtggaggtgaatcaaacataaaagttagt 34091389  T
Q  213 gtgtcccacacacgctttggaatttat 239  Q
    ||||  |||| | |||||||| |||||    
T  34091388 gtgttacacataggctttggagtttat 34091362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 294
Target Start/End: Original strand, 1820951 - 1821109
Alignment:
Q  135 tgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcccacacacgctttggaa 234  Q
    |||||| |||| | ||||||| || |||||||| |||||||| | |||  | |||  ||||| ||| |||| ||||| |||| ||||||||| |||  ||    
T  1820951 tgaaggagatttggcggtata-cctttttgcattcgattggcatgacttattgagacgaatcaaacgtaaaagttagtgtgttccacacacgatttaaaa 1821049  T
Q  235 tttatgtgcacttttcttcatgatcattttcatcatcttgatcaagttattgcagtagac 294  Q
    ||||||| ||| |||| ||||  ||||  |||||||| | ||||||||||||||||||||    
T  1821050 tttatgtacacgtttcatcatattcatcatcatcatcataatcaagttattgcagtagac 1821109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 5436972 - 5437051
Alignment:
Q  227 ctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgcagtagacccccaacaca 304  Q
    ||||||||||||| |||||  ||| ||||| |||| |||||||   ||||| ||||||||||||| |||||||||||||||    
T  5436972 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca-tagacccccaacaca 5437051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 11931953 - 11932188
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtga-tgtgcaag 109  Q
    |||||| | ||||||||||||| ||||||| | ||||||| |||||| || |||||||| ||||||| |||||||||||   ||||||||| |  |||||    
T  11931953 atactatatcattctttcttttatctagtgcacgagagaatttgacagaattttattctataaactaccattgtcgataaacttggtgtgaataagcaag 11932052  T
Q  110 tcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggtt 209  Q
    ||||| |||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||| |||| || ||||| ||||||||||||    
T  11932053 tcacatcaaggatttcatcgtatcctgaagggg-ttcgctggtataacccttttgcatccggttggcataactagtgggggcgaatcaaacctaaaggtt 11932151  T
Q  210 agcgtgtcccacacacgctttggaatttatgtgcact 246  Q
    || |||||| ||||| |||||| ||||||||||||||    
T  11932152 agtgtgtccaacacatgctttgaaatttatgtgcact 11932188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 28612267 - 28611985
Alignment:
Q  8 attatactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattgt-cgatacgtttggtgtga-tgtg 105  Q
    ||||||||||| ||||||||||| ||||||||| | ||| | |||||||| ||| || || |||| |||| |||||  ||||| | ||||||||| |||     
T  28612267 attatactaaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgtatactaccattgaacgatatgcttggtgtgaatgta 28612168  T
Q  106 caagtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaa 205  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||| ||| ||| |||| ||| |  ||| | |||||||||| |   |||||||||||||    
T  28612167 caagtcacgtcaaggattccattgtattctgaaggggattcgccgatat-accattttacatactgttgacataactggtggggaaaaatcgaacctaaa 28612069  T
Q  206 ggttagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatca---tcttgatcaagttattgcag 289  Q
    |||||  |||| |||||||  ||||  |||||||||||||  ||| ||||| |||| |||||||   ||||||||||||||||||||    
T  28612068 ggtta-tgtgttccacaca--ctttaaaatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagttattgcag 28611985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 24075669 - 24075619
Alignment:
Q  264 tcatcatcttgatcaagttattgcagtagacccccaacacaggttctaaca 314  Q
    ||||| |||| ||||||||||||||| ||||||| ||||||||||||||||    
T  24075669 tcatcttcttaatcaagttattgcagcagacccctaacacaggttctaaca 24075619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 217757 - 217999
Alignment:
Q  21 attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtcacaccaa 118  Q
    |||||||||||||||||||  | ||||||||||| || ||| ||||| ||||||||| ||||| |||||||  ||||||||| |||||||||| |  |||    
T  217757 attctttcttttctctagttcacgagagaaattggcagaacattattttgtaaactaccattgatcgatacacttggtgtgaatgtgcaagtctcttcaa 217856  T
Q  119 ggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggttagcgtgtcc 218  Q
    ||||| ||| ||||         |||||||||||||| |||||||| ||| | ||||| || ||||||| || ||||||| ||||||||| ||  |||||    
T  217857 ggatttcatcgtatt--------gattcgccggtata-cccttttgtatcaggttggcatagctggtgggggagaatcgatcctaaaggt-agtttgtcc 217946  T
Q  219 cacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 273  Q
    |||||||  ||||||||||||||||||| ||| | ||| |||| |||||||||||    
T  217947 cacacac--tttggaatttatgtgcactattcattatgttcatcttcatcatctt 217999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 14219004 - 14218742
Alignment:
Q  11 atactaaaccattctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaa 108  Q
    |||||||| ||||||||||||||||||||| | |||  ||||||| | ||||||||| ||||||||||||||| | ||||||||||||||| |||| ||     
T  14219004 atactaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgtacat 14218905  T
Q  109 gtcacaccaaggattccattgtatcctgaaggggattcgccggtataacccttttgcatccgattggcgtaactggtggaggtgaatcgaacctaaaggt 208  Q
    ||||   ||  ||||| || ||||| |||||| |||||   | ||| || |||||||||||  ||| | |||||||||| |  |||||||||||||| ||    
T  14218904 gtcaagtcagtgattctatagtatcttgaaggagattcattgatat-actcttttgcatccagttgacataactggtgg-gacgaatcgaacctaaaagt 14218807  T
Q  209 tagcgtgtcccacacacgctttggaatttatgtgcacttttcttcatgatcattttcatcatctt 273  Q
    |||  ||||  |||||| ||||  ||||||||||||||| || ||||| |||  |||||||||||    
T  14218806 tagtttgtctaacacacacttttaaatttatgtgcacttgtcatcatgttcaccttcatcatctt 14218742  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 34681211 - 34681118
Alignment:
Q  21 attctttcttttctctagtgtatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtca 112  Q
    |||||||||||||||| ||| | |||||||||||||| |||||||||  |||||||||||||| |||||||| ||| |||| ||||||||||||    
T  34681211 attctttcttttctctggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca 34681118  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 38327475 - 38327394
Alignment:
Q  44 gagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtgcaagtcacaccaaggatt 123  Q
    ||||||||||| || ||||||||| |||||| || ||||| ||||| ||||||||||| ||||| |||||||  ||||||||    
T  38327475 gagagaaattgccaaaactttattatgtaaattaccattgatcgatgcgtttggtgtgaatgtgtaagtcacgtcaaggatt 38327394  T

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