View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18956_low_3 (Length: 369)
Name: NF18956_low_3
Description: NF18956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18956_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 55162871 - 55162506
Alignment:
| Q |
1 |
cataaaaacaccatattgtcttagttctcttattcgcgagatataagcgtcaacgctagaatttacatcactgcacgtttctacaacattgaagtcattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162871 |
cataaaaacaccatattgtcttagttctcttattcgcgagatataagcgtcaacgctagaatttacatcactgcacgtttctacaacattgaagtcattc |
55162772 |
T |
|
| Q |
101 |
ataaacagagttgccagaggatctgattcatgtgctgcctcaaagaaatgaaatgtagcattgggtccaagcctttgttcgtagaaatcaaaatgaagca |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162771 |
ataaacagagttgctagaggatctgattcatgtgctgcctcaaagaaatgaaatgtagcattgggtccaagcctttgttcgtagaaatcaaaatgaagca |
55162672 |
T |
|
| Q |
201 |
tttcgttactgatatcccaatgtatgaattctgttttgtattggttcatgagactttgaattcgtgaattcacagcagatcttaactgtgtacctgtaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162671 |
tttcgttactgatatcccaatgtatgaattctgttttgtattggttcatgagactttgaattcgtgaattcacagcagatcttaactgtgtacctgtaag |
55162572 |
T |
|
| Q |
301 |
gttaagaacccatgcaggattgtatttagggtcttcccagaatatattgtgccctctagctatgat |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162571 |
gttaagaacccatgcaggattgtatttagggtcttcccagaatatattgtgccctctagctatgat |
55162506 |
T |
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