View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18956_low_6 (Length: 266)
Name: NF18956_low_6
Description: NF18956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18956_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 34848537 - 34848294
Alignment:
| Q |
6 |
gtcgaagaaaatacttttgagcatggcttgcaacttgtgttggtgttcttgtagtcacatagtttctagagatacccctccaatctccttttccaagctt |
105 |
Q |
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| T |
34848537 |
gtcgaataaaatacttttgagcatggcttgcaacttgtgttggtgttcttgtagtcacatagtttctagagatacccctccaatctccttttccaagctt |
34848438 |
T |
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| Q |
106 |
ctcaagtccaacaaggaattttctatgctcttcttctgtccatggaactcctaatgaataaaataacaaaatatc-nnnnnnncttgttagatgttaatt |
204 |
Q |
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| T |
34848437 |
ctcaagtccaacaaggaattttctatgctcttcttctgtccatggaactcctaatgaataaaataacaaaatatcaaaaaaaacttgttagatgttaatt |
34848338 |
T |
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| Q |
205 |
tcatttaacattctaaatcaataatttaaaattatagatgaacc |
248 |
Q |
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| T |
34848337 |
tcatttaacattctaaatcaataatttaaaattatagatgaacc |
34848294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 42729436 - 42729582
Alignment:
| Q |
11 |
agaaaatacttttgagcatggcttgcaacttgtgttggtgttcttgtagtcacatagtttctagagatacccctccaatctccttttccaagcttctcaa |
110 |
Q |
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| T |
42729436 |
agaaagtatttttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtctccttttcctagcttctcta |
42729535 |
T |
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| Q |
111 |
gtccaacaaggaattttctatgctcttcttctgtccatggaactcct |
157 |
Q |
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| T |
42729536 |
atccaacaaggaacattctgtgctcttcttctgtccatggaactcct |
42729582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 44300697 - 44300607
Alignment:
| Q |
11 |
agaaaatacttttgagcatggcttgcaacttgtgttggtgttcttgtagtcacatagtttctagagatacccctccaatctccttttccaa |
101 |
Q |
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| T |
44300697 |
agaaagtacttttgagcatgacttgcaacctgcgtaggtgttcttgttttcacatagttccttgagattcctctccaatcaccttttccaa |
44300607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 4386803 - 4386753
Alignment:
| Q |
14 |
aaatacttttgagcatggcttgcaacttgtgttggtgttcttgtagtcaca |
64 |
Q |
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| T |
4386803 |
aaatacttttgagcatgacttgcaacttgtgtttgtatccttgttgtcaca |
4386753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 29564950 - 29564910
Alignment:
| Q |
14 |
aaatacttttgagcatggcttgcaacttgtgttggtgttct |
54 |
Q |
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| T |
29564950 |
aaatacttttgagcatggcttgctacttgagttggtgttct |
29564910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 50569077 - 50569028
Alignment:
| Q |
8 |
cgaagaaaatacttttgagcatggcttgcaacttgtgttggtgttcttgt |
57 |
Q |
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| T |
50569077 |
cgaagaaagtacttttgagcatggctagccacctgagttggtgttcttgt |
50569028 |
T |
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