View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18956_low_7 (Length: 256)
Name: NF18956_low_7
Description: NF18956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18956_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 25528056 - 25527832
Alignment:
| Q |
28 |
acacttcatcttctcaaactaaactaaacaggtttaattaagaaaggtgttaagacaattctgctgggggtagtatatataagaagaaagatgttagaag |
127 |
Q |
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| T |
25528056 |
acacttcatcttctcaaactaaactaaacaggtttaattaagaaaggtgttaagacaattctgctggtggtagtatatataagaagaaagatgttagaag |
25527957 |
T |
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| Q |
128 |
aattcatttcattttcatttcaaattagaaagtacgaaattttagggtttcaaactcaacaatgtcactctgtcgccacctcctcctccgccgttcctcc |
227 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25527956 |
aattcatttcattttcatttcaaaatagaaagtacgaaattttagggtttcaaactcaacaatgtcactctttcgccacctcctcctccgccgttcctcc |
25527857 |
T |
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| Q |
228 |
gccgtcactctctgctcctcctcaa |
252 |
Q |
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|||||||||||| | |||| ||||| |
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| T |
25527856 |
gccgtcactctccgttccttctcaa |
25527832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 25535954 - 25535861
Alignment:
| Q |
162 |
cgaaattttagggtttca---aactcaacaatgtcactctgtcgccacctcctcctccgccgttcctccgccgtcactctctgctcctcctcaa |
252 |
Q |
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|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
25535954 |
cgaaatcttagggtttcattcaactcaacaatgtcactcctccgccacctcctcctccgccgttcctccgccgtcactctccgttccttctcaa |
25535861 |
T |
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