View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18957_high_17 (Length: 284)
Name: NF18957_high_17
Description: NF18957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18957_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 95 - 262
Target Start/End: Complemental strand, 8712866 - 8712703
Alignment:
| Q |
95 |
aaaaggtgaagatgaaaccatcaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
194 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8712866 |
aaaaggtgaagatgaaaccaccaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
8712767 |
T |
|
| Q |
195 |
ctaagttatctttttgacagattttgtaatcttggatatgcaagaattaagatcgaaaatgtccacct |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8712766 |
ctaagttatctttttgacagattttgtaatcttggatatgcaag----aagatcgaaaatgtccacct |
8712703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 95 - 262
Target Start/End: Complemental strand, 9064753 - 9064590
Alignment:
| Q |
95 |
aaaaggtgaagatgaaaccatcaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
194 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9064753 |
aaaaggtgaagatgaaaccaccaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
9064654 |
T |
|
| Q |
195 |
ctaagttatctttttgacagattttgtaatcttggatatgcaagaattaagatcgaaaatgtccacct |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9064653 |
ctaagttatctttttgacagattttgtaatcttggatatgcaag----aagatcgaaaatgtccacct |
9064590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University